Sequences from confirmation amplicon


Confirmation sequences for line 011E08 and hit At5g66710 are shown.
Line ID 011E08
Locus At5g66710 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:26637229
Primers used for PCR DE20 - 3144, show primer details
   
Sequence Name 33-K019339-022-011-E08C-3144
GenBank Accession LN500808 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>33-K019339-022-011-E08C-3144
GGGATGACGCACAATCCCACTATCCTTCGCAAGACCCTTCCTCTATACTGATTTTTGGAA
TTTGGATATGGGTTAAAGAACATTTCTTTATCCATGATTATAGGTTCAGGAGAGTTGTCC
CTGTGTCTGTGAAGATATTCCAGCCTAAAAGAACATCTGCTTTAAGCATTGAGCAGAGGA
AGAAGTTTCAGAGAGAGGTTTTGCTGCTTTCCAAGTTTAGACATGAAAACATTGTGCGGG
TAATATTGGAGCCTTTGATGTTTTGTTTGTTTTCATATGTTAGCAGCCTTATCTCGTTGG
TCGTCGATGGTATAATATCCCTAATGGGATCCTTTTGATGACAGTTCATTGGGGCGTGCA
TAGAACCAAAGTTGATGATAATTACTGAACTCATGGAAGGCAAACCTCT
   
Sequence Name 34-K019339-022-011-E08C-DE20
GenBank Accession LN501231 [GenBank]
Sequencing primer gene specific primer, DE20: 5'-GAAGAGTATTGCCTTCCATGAGTT-3'
Sequence (A. th genome BLAST matches underlined)
>34-K019339-022-011-E08C-DE20
AATTATCATCAACTTTGGTTCTATGCACGCCCCAATGAACTGTCATCAAAAGGATCCCAT
TAGGGATATTATACCATCGACGACCAACGAGATAAGGCTGCTAACATATGAAAACAAACA
AAACATCAAAGGCTCCAATATTACCCGCACAATGTTTTCATGTCTAAACTTGGAAAGCAG
CAAAACCTCTCTCTGAAACTTCTTCCTCTGCTCAATGCTTAAAGCAGATGTTCTTTTAGG
CTGGAATATCTTCACAGACACAGGGACAACTCTCCTGAACCTATAATCATGGATAAAGAA
ATGTTCTTTAACCCATATCCAAATTCCAAAAATCAGTATAGAGGAAGGGTCTTGCGAAGG
ATAGTGGGATTGTGCGTCATCCCTTACGTCAGTGGAGATATCACATCAATCCACTTGCTT
TGAAGACGTGGTTGGAACGTCTTCTTTTTCCACGATGCTCCTCGTGGGTGGGG
Primers used for PCR FI01 - 8474, show primer details
   
Sequence Name 11-K028095-022-011-E08C-8409
GenBank Accession queueing for submission to ENA/GenBank
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>11-K028095-022-011-E08C-8409
TTCTGCAGAATTTGGTGTTCCGGCTAACCCT
   
Sequence Name 11-K028095-022-011-E08C-FI01
GenBank Accession LN490969 [GenBank]
Sequencing primer gene specific primer, FI01: 5'-ATCAATTCGCTTTCACTATCAACA-3'
Sequence (A. th genome BLAST matches underlined)
>11-K028095-022-011-E08C-FI01
TATCTATAGGGGACTTCATCGGCGAAGGTTCATCATCTACTGTCTACAGAGGATTGTGGG
TTTCTCGTTTCTCAATCTCCTACTTCGAAATTGCTTCTGGGTTTGGTGCAAAAATTGCAG
ATTTTGTTTTCCTGTTTATCCTTTCTTGATTTCGGTATTTATTCGAAGAGTATAGGTTTC
AGGGTATATTGGTGATTTAATTTTGGGTTTAACCTTGAAATTTGGAATCTTTCATGCTGG
TTAGTGTTAGGTTTTGTCACTCTTAGGTTTATGTAGTCTCAGCTCTAGTGTTTCCTACAC
AATGCCTCAAAAAAGGATTAATGTTACAGAGAAACCATGAATTACAATAAGAAGGAAGAT
TCTGATGTGGGTGTTTGAATGAGTAATCTTTGTATTGTGGCATACTGATAAAACGACAAA
TTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCT
TTATTTCGACGTGTCTACATTCACGCCCAAAT

Last Updated on 06.12.2018 16:11