Sequences from confirmation amplicon


Confirmation sequences for line 015C10 and hit At5g20990 are shown.
Line ID 015C10
Locus At5g20990 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:7130065
Primers used for PCR MM44 - 3144, show primer details
   
Sequence Name 05-K020131-022-015-C10C-MM44
GenBank Accession LN488162 [GenBank]
Sequencing primer gene specific primer, MM44: 5'-CTTTGTCCTGGAATACATTGGTTT-3'
Sequence (A. th genome BLAST matches underlined)
>05-K020131-022-015-C10C-MM44
CTTAAACATATTTGTCACATATGTCTTAGCTTCTGATAATTGCGGAAGTGGCTAGTTGAT
GGGTATATTAAGTTTATGCTTGTGGGTAAAAAGTTTTCTGTCTGTTTAGAAGACCTGTTA
CTGACTGACTATTTGATGAGGAATGAGCTAGAACATGAATTTATAGTAAAAAAACGTCTA
GATTCACCTTCTCGATTTTCTTATAATGTGGCAAAATGGATGCAAATATTAATAATGTAG
AGTTGATATCAAACACTGATAGTTTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGG
GTACCCTGTCCTCTCCAAATGAAATGAACTTCCTTATATAGAGGAAGGGTCTTGCGAAGG
ATAGTGGGATTGTGCGTCATCCCTTACGTCAGTGGAGATATCACATCAATCCACTTGCTT
TGAAGACGTGGTTGGAACGTCTTCTTTTTCCACGATGCTCCTCGTGGGTGGGGG
   
Sequence Name 06-K020131-022-015-C10C-3144
GenBank Accession LN488610 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>06-K020131-022-015-C10C-3144
GTAAGGGATGACGCACAATCCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGGAAGT
TCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGT
TTAAACTATCAGTGTTTGATATCAACTCTACATTATTAATATTTGCATCCATTTTGCCAC
ATTATAAGAAAATCGAGAAGGTGAATCTAGACGTTTTTTTACTATAAATTCATGTTCTAG
CTCATTCCTCATCAAATAGTCAGTCAGTAACAGGTCTTCTAAACAGACAGAAAACTTTTT
ACCCACAAGCATAAACTTAATATACCCATCAACTAGCCACTTCCGCAATTATCAGAAGCT
AAGACATATGTGACAAATATGTTTAAGACCATCAAAACCAATGTATTC
Primers used for PCR FI04 - 8474, show primer details
   
Sequence Name 24-K028096-022-015-C10C-8409
GenBank Accession LN496862 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>24-K028096-022-015-C10C-8409
GAAACTCTGGAACCGAAACTTCCTTAAAGACTTACTTCATTTTGGTCGATTAAAAAGAGT
GCATCTAGATACACCTCTCCAGTTCGTTATTCTGGTGAGGTCACAAATTCGATGCCATAG
TAAAACTGCACAGTTATATTGCTCCCTGTCATAGTGAGACAGGAAAGCATCACAGTGCTT
TGCTACATCTTTAAGCAAAATCTCATCTCCATGCCATTCTTCATGTTAAATGCCCAAACC
CTCTCCAGATAGTTTTTTGTTTGTATTCACTTCAAATTTGTGTGAAAGTTTTGGTCTTAT
CAATTATTTATCCATTGGTTTTATGATCATTTCTTGTTTGAATTTCTTATGCTGGTGTAG
TGGGCCCAGAGCTGTGTCAGTAGTTGATTCCTCGTCTGAAAAACTGGGGGGAGCTAAGGT
AGTTGCAACAGCTGTTGTCCCCGATGAAGTGGAAAGAATAAAAGACATTCTTCAGAAATG
GAGCGATGTTGACGAAATGGATCTCATTCTTACACTTGGTATACAAACATTTAGTTACTT
ATTGTTGATTTGTTGTTGTATTTGAAGCATATTTTTGATATAGTTAACATCTTGGAATTA
GGTGGTACTGGCTTCACTCCAA
   
Sequence Name 24-K028096-022-015-C10C-FI04
GenBank Accession LN496863 [GenBank]
Sequencing primer gene specific primer, FI04: 5'-CAGGTGTTACATCTCTTGGAGTGA-3'
Sequence (A. th genome BLAST matches underlined)
>24-K028096-022-015-C10C-F04
ATGTTACTATATCACAAATATGGCTTCACATACAACAACAAATCAACAATAAGTAACTAA
ATGTTTGTATACCAAGTGTAAGAATGAGATCCATTTCGTCAACATCGCTCCATTTCTGAA
GAATGTCTTTTATTCTTTCCACTTCATCGGGGACAACAGCTGTTGCAACTACCTTAGCTC
CCCCCAGTTTTTCAGACGAGGAATCAACTACTGACACAGCTCTGGGCCCACTACACCAGC
ATAAGAAATTCAAACAAGAAATGATCATAAAACCAATGGATAAATAATTGATAAGACCAA
AACTTTCACACAAATTTGAAGTGAATACAAACAAAAAACTATCTGGAGAGGGTTTGGGCA
TTTAACATGAAGAATGGCATGGAGATGAGATTTTGCTTAAAGATGTAGCAAAGCACTGTG
ATGCTTTCCTGTCTCACTATGACAGGGAGCAATATAACTGTGCAGTTTTACTATGGCATC
GAATTTGTGACCTCACCAGAATAACGAACTGGAGAGGTGTATCTAGATGCACTCTTTTTA
ATCGACCAAAATGAAGTAAGTCTTGTAAGAAGTTTCGGTTCCAGAGTTTTCACTCACTGA
ATTTAACTCGGCAATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAG
TAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGA
AAGTACATTTTGATAAAACGACNAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAA
ACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTAC

Last Updated on 06.12.2018 16:11