Sequences from confirmation amplicon


Confirmation sequences for line 022F04 and hit At3g28910 are shown.
Line ID 022F04
Locus At3g28910 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:10912016
Primers used for PCR RS07 - 8474, show primer details
   
Sequence Name 47-K016589-022-022-F04C-8409
GenBank Accession LN506030 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>47-K016589-022-022-F04C-8409
CATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGGCCTTTTGATAT
GATAATGACTTTTCAATTTCTCTAATTTTGTCTCTTCACACATTTTCTTTCGAAAATTAG
AAGATTTGTTTTGATTTTTAATAGAGAGCATTTAATATTTGGTGTAGATGGGCTGCAATT
GCGTCATATCTTCCACAAAGGACAGACAATGACATTAAGAACTATTGGAACACTCATTTG
AAGAAGAAACTCAACAAAGTCAATCAAGATTCTCATCAAGAACTTGACCGTTCCTCGCTC
TCATCTTCACCATCGTCTTCTTCTGCTAATTCCAACTCAAACATCTCAAGAGGCCAATGG
GAAAGGCGACTTCAAACCGATATCCACTTGGCGAAAAAGGCTCTCTCTGAGGCTTTATCT
CCTGCCGTTGCACCAATCATTACATCTACAGTGACAACAACGTCTTCCTCTGCTGAATCA
AGACGCTCTACTTCCTCAGCTAGCGGGTTTCTTAGGACGCAAGAAACATCTACAACTTAT
GCCTCAAGCACCGAAAATATCGCGAAATTGCTCAAAGGGTGGGTGAAAAACTCGCCGAAG
ACTCAAAACTCCGCGGATCAAATCGCTTCTACAGAGGTAAAAGAAGTGATCAAGAGTGAT
GATGGGAAGGAGTGTGCAGGGGCATTTCAGTCATTTTCTGAGTTTGATCACTCATATCAA
CAGGCTGGTGTTTCACCTGATCATGAGACCAAACCAGACATAACTGGATGCTGCAGTAAC
CAAAGTCAATGGT
   
Sequence Name 51-K016589-022-022-F04C-RS07
GenBank Accession LN507339 [GenBank]
Sequencing primer gene specific primer, RS07: 5'-CACTTCTCAAACAAAGACCATTGA-3'
Sequence (A. th genome BLAST matches underlined)
>51-K016589-022-022-F04C-rs07
TACTGCAGCTATCCAGTTATGTCTGGTTTGGTCTCATGATCAGGTGAAACACCAGCCTGT
TGATATGAGTGATCAAACTCAGAAAATGACTGAAATGCCCCTGCACACTCCTTCCCATCA
TCACTCTTGATCACTTCTTTTACCTCTGTAGAAGCGATTTGATCCGCGGAGTTTTGAGTC
TTCGGCGAGTTTTTCACCCACCCTTTGAGCAATTTCGCGATATTTTCGGTGCTTGAGGCA
TAAGTTGTAGATGTTTCTTGCGTCCTAAGAAACCCGCTAGCTGAGGAAGTAGAGCGTCTT
GATTCAGCAGAGGAAGACGTTGTTGTCACTGTAGATGTAATGATTGGTGCAACGGCAGGA
GATAAAGCCTCAGAGAGAGCCTTTTTCGCCAAGTGGATATCGGTTTGAAGTCGCCTTTCC
CATTGGCCTCTTGAGATGTTTGAGTTGGAATTAGCAGAAGAAGACGATGGTGAAGATGAG
AGCGAGGAACGGTCAAGTTCTTGATGAGAATCTTGATTGACTTTGTTGAGTTTCTTCTTC
AAATGAGTGTTCCAATAGTTCTTAATGTCATTGTCTGTCCTTTGTGGAAGATATGACGCA
ATTGCAGCCCATCTACACCAAATATTAAATGCTCTCTATTAAAAATCAAAACAAATCTTC
TAATTTTCGAAAGAAAATGTGTGAAGAGACAAAATTAGAGAAATTGAAAAGTCATTATCA
TATCAAAAGGCCAGGATATATTCAATTGTAAATGGCTTCATG
Primers used for PCR FL34 - 3144, show primer details
   
Sequence Name 94-K028756-022-022-F04C-3144
GenBank Accession LN515272 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>94-K028756-022-022-F04C-3144
CTATATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGT
TTCCCGCCTTCGGTTTAAACTATCAGTGTTTATTGGACATATTGCTTGGAGATGAACAAT
CATCTTTTCTTCATGTTCTGTGAAATTGCCTCTTTTGATTCCTGGCCTTAAATAGTTTGT
CCATCTAAGTCTACAACTCTTGCTGCATCTAAGCAGCCCTGAAAATTTATAAGAACGAAC
AAATATTGAGAACCGATGAGAAAATATATAAATAACAAGATCTCATGCATTAGATCTTAA
TTTCATGGTCAATAAACAAAACCCTAATTTCTACATATGTTTTCATTAAGCTGATTCCAC
AATCTTAAAGACCTAAAGAAGAACCAAATGAAGATCAAAACCAATTTGGAGAACACAAAT
TTCNTTCCAAA
   
Sequence Name 95-K028756-022-022-F04C-FL34
GenBank Accession LN515324 [GenBank]
Sequencing primer gene specific primer, FL34: 5'-GGTTTGGATTGAAATTTGTGTTCT-3'
Sequence (A. th genome BLAST matches underlined)
>95-K028756-022-022-F04C-FL34
GGGTTTTGTTTATTGACCATGAAATTAAGAATCTAATGCATGAGATCTCGTTATTTATAT
ATTTTCTCATCGGTTCTCAATATTTGTTCGTTCTTATAAATTTTCAGGGCTGCTTAGATG
CAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAAGGCCAGGAATCAAAAGAGGCAA
TTTCACAGAACATGAAGAAAAGATGATTGTTCATCTCCAAGCAATATGTCCAATAAACAC
TGATAGTTTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTACCCTGTCCTCTCC
AAATGAAATGAACTTCCTTATATAGAGGAAGGGTCTTGCGAAGGATAGTGGGATTGTGCG
TCATCCCTTACGTCAGTGGAGATATCACATCAATCCACTTGCTTTGAAGACGTGGTTGGA
ACGTCTTCTTTTTCCACGATGCTCCTCGTGGGTGG

Last Updated on 06.12.2018 16:11