Sequences from confirmation amplicon


Confirmation sequences for line 024B05 and hit At5g56270 are shown.
Line ID 024B05
Locus At5g56270 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:22782781
Primers used for PCR FL41 - 3144, show primer details
   
Sequence Name 06-K028757-022-024-B05C-3144
GenBank Accession LN488673 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>06-K028757-022-024-B05C-3144
GACGTAAGGGATGACGCACAATCCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGGA
AGTTCATTTCATTTGGAGAGGACAGGGTACCAGCTTTGCAATTCATACAGAAGTGAGAAA
AATGGCTTCTATGATATCCTCTTCAGCTGTGACTACAGTCAGCCGTGCTTCTACGGTGCA
ATCGGCCGCGGTGGCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCCAGTTAAGAA
GGTCAACACTGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAAGTGCATGGTGAC
GGTGTTCGGCATTCTGAATCTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCGGCTAGA
CCCCGTGGGAGATTCGACAGACAAGTCACAACTAACAATCAGTCTCCTTTTAGCCGTCCC
TTTAGCTTTCAGCCACATTTGGGTCCTCCTTCTGGTTTCTCCTTCGGTTTAGGACAAACC
GGTTTGGTTAATCTTTCAATGCCTGGTTTAGCGTATGGTCAAGGGAAAATGCCGGGTTTG
CCTCACCCGTATATGACACAACCGGTTGGGATGAGTGAAGCAATGATGCAGAGAGGGATG
GAACCAAAGGTTGAACCGGTTTCAGATTCAGGACAATCGGTATATAACCAGATCATGAGT
AGATTACCTCAGATTTGAAATTTACTCTTCTTCTTCTTCTTCTGCATTTGGTCACTCCTT
ATAATAACTTTTAATT
   
Sequence Name 07-K028757-022-024-B05C-FL41
GenBank Accession LN489133 [GenBank]
Sequencing primer gene specific primer, FL41: 5'-AAAGAAGACAAAACCAAGGAATGA-3'
Sequence (A. th genome BLAST matches underlined)
>07-K028757-022-024-B05C-FL41
ATAAAACAGCCTTTTACCTTCCCCAAAGTTTGAAACCAATAAATGAAAGAAGAAGAAGAA
GCAGAAATTAAAAGTTATTATAAGGAGTGACCAAATGCAGAAGAAGAAGAAGAAGAGTAA
ATTTCAAATCTGAGGTAATCTACTCATGATCTGGTTATATACCGATTGTCCTGAATCTGA
AACCGGTTCAACCTTTGGTTCCATCCCTCTCTGCATCATTGCTTCACTCATCCCAACCGG
TTGTGTCATATACGGGTGAGGCAAACCCGGCATTTTCCCTTGACCATACGCTAAACCAGG
CATTGAAAGATTAACCAAACCGGTTTGTCCTAAACCGAAGGAGAAACCAGAAGGAGGACC
CAAATGTGGCTGAAAGCTAAAGGGACGGCTAAAAGGAGACTGATTGTTAGTTGTGACTTG
TCTGTCGAATCTCCCACGGGGTCTAGCCGCCGGCTCTCATCGAAGAAGGAGTCCTCGGTG
AGATTCAGAATGCCGAACACCGTCACCATGCACTTTACTCTTCCACCATTGCTTGTAATG
GAAGTAATGTCAGTGTTGACCTTCTTAACTGGGAATCCAGTCATGGATTTGAGGCCGCCG
AATGGAGCCACCGCGGCCGATTGCACCGTANAAGCACGGCTGACTGTAGTCACAGCTGAA
GAGGATATCATAGAAGCCATTTTTCTCACTTCTGTATGAATTGCANAGCTGGTACCCTGT
CCTCTCCAAATG
Primers used for PCR IS06 - 8474, show primer details
   
Sequence Name 15-K114404-0022-024-B05C-8409
GenBank Accession LN493073 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>15-K114404-0022-024-B05C-8409
ATTTCATTGAATATATCCTGCGGCTGAACCGCCGCTGTTACCGTTACCACTATCACCACC
GCCTCCGTGGCTGCTGTTGCGTGCAGCGGGGACGTCATGGTTATGTTTGCCTTCGTAAGT
TGTTATAACGGATTTGAGATCATGAGAAGCTCTTTCAACATGTTTCCTCACTGTACATCC
TGGAGCTGTGCATTTGTAATAACTCCTAGAAAAACATTATGAAAACGTTATAAAAAAAGA
ATTGGTCTTGTGATTGCCGATAAACATATAAACAGAACCAGACCAAAACAGAGGAGGGGA
TTATAAAGAACCTTGGATTTGGATTGCCTTTGACAACTTTCTGACCATATTTTCGCCAGC
GATAACCATCATCAAGAATGTCAACATCACTCGTTGTCTGCACAACAACTCTNGGCTCAC
GTATGGCTCTGGTTGATCCACTCATCTCTGCTGCAAAAGCTTCTAGTTTCCTGTAAAATC
AAAAAGTTTTTGAGTCTCGTTTACTGAGTCATCGAGGATTCGGTGTTTCGATTGCTAA
   
Sequence Name 37-K114405-0022-024-B05C-IS06
GenBank Accession LN502706 [GenBank]
Sequencing primer gene specific primer, IS06: 5'-AGAAGGTTTGTTTTAGCAATCGAA-3'
Sequence (A. th genome BLAST matches underlined)
>37-K114405-0022-024-B05C-IS06
ACGAGACTCAAACTTTTTGATTTTACGGAAACTAGAAGCTTTTGCAGCAGAGATGAGTGG
ATCAACAAGAGCCATACGTGAGCCAAGAGTTGTTGTGCAGACAACGAGTGATGTTGACAT
TCTTGATGATGGTTATCGCTGGCGAAAATATGGTCAGAAAGTTGTCAAAGGCAATCCAAA
TCCAAGGTTCTTTATAATCCCCTCCTCTGTTTTGGTCTGGTTCTGTTTATATGTTTATCG
GCAATCACAAGACCAATTCTTTTTTTATAACGTTTTCATAATGTTTTTCTAGGAGTTATT
ACAAATGCACAGCTCCAGGATGTACAGTGAGGAAACATGTTGAAAGAGCTTCTCATGATC
TCAAATCCGTTATAACAACTTACGAAGGCAAACATAACCATGACGTCCCCGCTGCACGCA
ACAGCAGCCACGGAGGCGGTGGTGATAGTGGTAACGGTAACAGCGGCGGTTCAGCCGCAG
GATATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTA
TGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATG
TAGATGTCCG

Last Updated on 06.12.2018 16:11