Sequences from confirmation amplicon


Confirmation sequences for line 027B02 and hit At1g78130 are shown.
Line ID 027B02
Locus At1g78130 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:29401041
Primers used for PCR GL04 - 8474, show primer details
   
Sequence Name 55-K016590-022-027-B02C-8409
GenBank Accession LN508648 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>55-K016590-022-027-B02C-8409
CATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGTATTTTTTATAG
GTTATTGTCTGATGTTATGCATTCTTGATGGGTCTTTTCGTGGCTGCATCTTCTCTTGGT
GGCTTGTTTGGAGGCAAAATGGGAGATTTTCTGTCTACTCGTCTTCCCAATTCCGGAAGA
ATCATTCTCGCGCAGATTAGTTCAGCCTCAGCGATCCCGCTCGCTGCAATTCTCTTGTTG
GTCTTACCAGATGATCCATCTACAGCTGCAATCCATGGTCTGATCTTAGTCCTATTGGGG
CTATTTGTTTCTTGGAATGCTCCTGCTACCAACAAGTAAAGTTTCTCTCTTTACTATGCC
TAAAGACTTTATATCTCTCTATCGTTTAACTGTTTTTGCTGACCTGGTGAAACAAACGCA
GCCCAATCTTCGCAGAGATCGTTCCAGAGAAATCAAGAACAAGCGTCTACGCACTGGACA
AATCGTTTGAGTCTATCTTGTCATCGTTTGCACCTCCTATAGTTGGAATCCTGGCACAAC
ATGTTTATGGATACAAGCCAATCCCTGAAGGGTCATCGAGGTCAACA
   
Sequence Name 59-K016590-022-027-B02C-GL04
GenBank Accession LN509847 [GenBank]
Sequencing primer gene specific primer, GL04: 5'-ATCTGTGGCTATCTCTGTTGACCT-3'
Sequence (A. th genome BLAST matches underlined)
>59-K016590-022-027-B02C-gl04
CCTTCAGGATTGGCTTGTATCCATAAACATGTTGTGCCAGGATTCCAACTATAGGAGGTG
CAAACGATGACAAGATAGACTCAAACGATTTGTCCAGTGCGTAGACGCTTGTTCTTGATT
TCTCTGGAACGATCTCTGCGAAGATTGGGCTGCGTTTGTTTCACCAGGTCAGCAAAAACA
GTTAAACGATAGAGAGATATAAAGTCTTTAGGCATAGTAAAGAGAGAAACTTTACTTGTT
GGTAGCAGGAGCATTCCAAGAAACAAATAGCCCCAATAGGACTAAGATCAGACCATGGAT
TGCAGCTGTAGATGGATCATCTGGTAAGACCAACAAGAGAATTGCAGCGAGCGGGATCGC
TGAGGCTGAACTAATCTGCGCGAGAATGATTCTTCCGGAATTGGGAAGACGAGTAGACAG
AAAATCTCCCATTTTGCCTCCAAACAAGCCACCAAGAGAAGATGCAGCCACGAAAAGACC
CATCAAGAATGCATAACATCAGACAATAACCTATAAAAAATACAGGATATATTCAATTGT
AAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATATGG
AGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCG
TTATTATAAAATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCGTATTTATA
GGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACA
Primers used for PCR FL48 - 3144, show primer details
   
Sequence Name 92-K028756-022-027-B02C-3144
GenBank Accession LN515155 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>92-K028756-022-027-B02C-3144
TCTATATAAGGAAGTTCATTTCATTTGCAGAGGAACAGGGTACCCGGGGATCAGATTGTC
GTTTCCCGCCTTCGGTTTAAACTATCAGTGTTTAAAACTATCATTTTAAAATGTACATGT
CACACGAATAGTTTTCCCGTGTGAGAACCCAATGAGTTCCAACCACATAGGTGCAAAAGA
AAGAGCAGACCAAGGAAACGATCCTGTCACTCCCTGAGCTACAATGATCTGAAAAGACCG
AATCTTTATGACAGTATCAGCTTCCCGGACCAAATCCTTCACCTCTGTACAAAAAGGTTT
CCTCGAACCTGGTTGATTCGAAACATCAACACCATCCTTCACAAAATGTGGATCATTGGC
GAAAACTCTAACTAGCACACCAACAATAACACTGATCACACCTACGATATGGAA
   
Sequence Name 93-K028756-022-027-B02C-FL48
GenBank Accession LN515220 [GenBank]
Sequencing primer gene specific primer, FL48: 5'-GGAGAGTTGCTTTCCATATCGTAG-3'
Sequence (A. th genome BLAST matches underlined)
>93-K028756-022-027-B02C-FL48
CACATTTTTGTGAAGGATGGTGTCGATGTTTCGAATCAACCAGGTTCGAGGAAACCTTTT
TGTACAGAGGTGAAGGATTTGGTCCGGGAAGCTGATACTGTCATAAAGATTCGGTCTTTT
CAGATCATTGTAGCTCAGGGAGTGACAGGATCGTTTCCTTGGTCTGCTCTTTCTTTTGCA
CCTATGTGGTTGGAACTCATTGGGTTCTCACACGGGAAAACTATTCGTGTGACATGTACA
TTTTAAAATGATAGTTTTAAACACTGATAGTTTAAACCGAAGGCGGGAAACGACAATCTG
ATCCCCGGGTACCCTGTCCTCTCCAAATGAAATGAACTTCCTTATATAGAGGAAGGGTCT
TGCGAAGGATAGTGGGATTGTGCGTCATCCCTTACGTCAGTGGAGATATCACATCAATCC
ACTTGCTTTGAAGACGTGGTTGGAACGTCTTCTTTTTCCACGATGCTCCTCGTGGGTGG

Last Updated on 06.12.2018 16:11