Sequences from confirmation amplicon


Confirmation sequences for line 053G05 and hit At3g27650 are shown.
Line ID 053G05
Locus At3g27650 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:10239662
Primers used for PCR CW41 - 8474, show primer details
   
Sequence Name 73-K104127-0022-053-G05C-CW41
GenBank Accession LN512886 [GenBank]
Sequencing primer gene specific primer, CW41: 5'-GAGACAGAGAGTGCTTTGATGAGA-3'
Sequence (A. th genome BLAST matches underlined)
>73-K104127-0022-053-G05C-CW41
CTAATACTACGCTCTAAAACGTAAAACCTCGTGTGAGTAATTCGAATTTCCGACACCCAT
TTTCTTCATATTACTATGAATATCATATGGACGTTTACATTTTAATGTGTAATGTTACAC
AAGTTTATATAATTTCCCATAATCGTCTTGTGTGTTAGATTCACCAATAACTTTTTAGTA
TGGATTATTCTCAATTTCCCAAGATTTTATAATTATGTAAAATTAATTCATTAGACAAGG
ATGTATATATTTGTTTGAGATATATTTGAAATATAAATTTAGGTGGTATAACATCTTTTT
GACGCAGAAAGAACACTATGAATAATGAATTTTAAGGATAATAAGATAGGAACATGCATC
ATACGTCTTCTAAGTTATATTGATGATGAGACTATTATTTACATGGCTTCATGTCCGGGA
AATCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTA
CCAATTTTTTTTCAATTCAAAAATGTAAATATCCGCA
   
Sequence Name 86-K104128-0022-053-G05C-8409
GenBank Accession LN514652 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>86-K104128-0022-053-G05C-8409
ATGAGCCATGTAAATAATAGTCTCATCATCAATATAACTTAGAAGACGTATGATGCATGT
TCCTATCTTATTATCCTTAAAATTCATTATTCATAGTGTTCTTTCTGCGTCAAAAAGATG
TTATACCACCTAAATTTATATTTCAAATATATCTCAAACAAATATATACATCCTTGTCTA
ATGAATTAATTTTACATAATTATAAAATCTTGGGAAATTGAGAATAATCCATACTAAAAA
GTTATTGGTGAATCTAACACACAAGACGATTATGGGAAATTATATAAACTTGTGTAACAT
TACACATTAAAATGTAAACGTCCATATGATATTCATAGTAATATGAAGAAAATGGGTGTC
GGAAATTCGAATTACTCACACAGGTTTTACGTTTTAGAGCTAGTATTAGTTCTAAACAAA
CAAACAACATGTTCTCATCAAAGCATCTTCTGTCTC
Primers used for PCR CW42 - 8474, show primer details
   
Sequence Name 33-K104195-0022-053-G05C-CW42
GenBank Accession LN500977 [GenBank]
Sequencing primer gene specific primer, CW42: 5'-TACCTCATGAGATCAGCATTTGTC-3'
Sequence (A. th genome BLAST matches underlined)
>33-K104195-0022-053-G05C-CW42
ACTCAGACCTGTCTTTGGAGCACCGAGATCGCTCCACGCAGCCATACACTGGATCTTTAA
GTCGTGCTTCCGCCTCGTAAGCCAGCGAGTTGACCGCATCTTCCCGCTGATGGGGAGCCA
CTTCGTGGAGGATCTTGCTCACATTGCTTGCCCCGAATATCCGGTGGACGTTCGCAAACT
TTGTAGGTTCCTCCGGCGGAAAATAGGGTGCGAATACGCAGTCTGACGTGCATTTACGCC
GGAGGAATTTGCATGCTGCACACGGTGAGTTTGTGTAGTTCGACATATATATCCCCTGAT
TTTTCAGTTGCAAAAAAATGGCAAAAACGATTTAATCACATCATAGTATCTTATTAGTAA
TTCTCGAAACTACAGTATAAGATTGATATGAATTTTGATCCATATCGATCGATATTGTAA
TTCTCTGGAGTCTCTTCTTCTTCTATATACATCAATTATCAATATCTTATCAACAATATG
TCTACGTACACTTTTTAAAAATTGATACAGTTTCAAATGTTTTATTTCCATTTTGAATTT
GGTAACTAGCANAGTAGCAATAAAATGGTATCATCATCAATACAGGATATATTCAATTGT
AAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATATGG
AGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTC
   
Sequence Name 49-K104196-0022-053-G05C-8409
GenBank Accession LN506828 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>49-K104196-0022-053-G05C-8409
TTCGGACTGAGCCATTTACATTGAATATATCCTGTATTGATGATGATACCATTTTATTGC
TACTTTGCTAGTTACCAAATTCAAAATGGAAATAAAACATTTGAAACTGTATCAATTTTT
AAAAAGTGTACGTAGACATATTGTTGATAAGATATTGATAATTGATGTATATAGAAGAAG
AAGAGACTCCAGAGAATTACAATATCGATCGATATGGATCAAAATTCATATCAATCTTAT
ACTGTAGTTTCGAGAATTACTAATAAGATACTATGATGTGATTAAATCGTTTTTGCCATT
TTTTTGCAACTGAAAAATCAGGGGATATATATGTCGAACTACACAAACTCACCGTGTGCA
GCATGCAAATTCCTCCGGCGTAAATGCACGTCAGACTGCGTATTCGCACCCTATTTTCCG
CCGGAGGAACCTACAAAGTTTGCGAACGTCCACCGGATATTCGGGGCAAGCAATGTGAGC
AAGATCCTCCACGAAGTGGCTCCCCATCAGCGGGAAGATGCGGTCAACTCGCTGGCTTAC
GAGGCGGAAGCACGACTTAAAGATCCAGTGTATGGCTGCGTTGGAGCGATCTCGGTGCTC
CAAAGACAGGTCTTGAGGTTGCAAAGGGAACTCGAGGAGACAAATGCT

Last Updated on 06.12.2018 16:11