Sequences from confirmation amplicon


Confirmation sequences for line 054E07 and hit At5g48150 are shown.
Line ID 054E07
Locus At5g48150 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:19522401
Primers used for PCR GL05 - 8474, show primer details
   
Sequence Name 06-K016592-022-054-E07C-8409
GenBank Accession LN488584 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>06-K016592-022-054-E07C-8409
CATGTAGATTTCCCGGACATGTAGATTCTTCAAATGTTTTGAAGATTCAAATGAGCGACT
AAATTGCATACAAGTAGAAACACATTAATTGCCATCACACTAGAGAAATGTCACTGTCTC
ATTTCCAAGCACACGAGGCAACCAAATCTCGATGCATCCAACCAAGATACAAAGCTCCAT
CTCTTTCTTCTAGCCTGTACTTGTCTGAGTAGTTCCTAAGCAGACTTTTAATGGTTGAAT
TCACCAAGGGACTCAACGGGTAAGGAGTGAAACCCGCCATCCCAAACCGTGACCTCCATT
TTCCTAGGAGCTCGTGTCGCTCCACCCGATCAGCTCCTTCACATGCGATGATGTTCACGA
CATCTCTTGCTAGACAATGTTGCTCCACATTAATCCTCTGTTTGTGATCTCTTGGTAGAG
TCACATCAATTGACTCAAACATCGCGGCATAGTAGTTCATTGTCTCCATGAACCTCGGGA
AGAAAGCGGCTGTGTTTGT
   
Sequence Name 10-K016592-022-054-E07C-GL05
GenBank Accession LN490426 [GenBank]
Sequencing primer gene specific primer, GL05: 5'-ACAAGAGTCAAACACAAACACAGC-3'
Sequence (A. th genome BLAST matches underlined)
>10-K016592-022-054-E07C-gl05
CGCTTTCTTCCCGAGTTCATGGAGACAATGAACTACTATGCCGCGATGTTTGAGTCAATT
GATGTGACTCTACCAAGAGATCACAAACAGAGGATTAATGTGGAGCAACATTGTCTAGCA
AGAGATGTCGTGAACATCATCGCATGTGAAGGAGCTGATCGGGTGGAGCGACACGAGCTC
CTAGGAAAATGGAGGTCACGGTTTGGGATGGCGGGTTTCACTCCTTACCCGTTGAGTCCC
TTGGTGAATTCAACCATTAAAAGTCTGCTTAGGAACTACTCAGACAAGTACAGGCTAGAA
GAAAGAGATGGAGCTTTGTATCTTGGTTGGATGCATCGAGATTTGGTTGCCTCGTGTGCT
TGGAAATGAGACAGTGACATTTCTCTAGTGTGATGGCAATTAATGTGTTTCTACTTGTAT
GCAATTTAGTCGCTCATTTGAATCTTCAAAACATTTGAAGAATCTACATGTCCGGGAAAT
CTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCA
ATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATT
TTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTAT
TCTAATTCGGAAATCTTTATTTCGACGTGTCTACAT
Primers used for PCR FM22 - 8474, show primer details
   
Sequence Name 05-K029742-022-054-E07C-8409
GenBank Accession LN488226 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>05-K029742-022-054-E07C-8409
ATTTACAATTGAATATATNGTCAAAGTCAACTCTTTCCTCAATCAAAATTTAAGTATGTA
GTTCACACGAATGGATCTTTGTAATAATGTAATATATGAAATCAATCTAGTTTCAATAAA
ATTACAAAATAGTCTTTTCATACTTTTGTGACATCGCAGCGACTTCAATAATTTTGAGAG
AGAACACGTGTAAATGTCTCTTTCGCAGTGTGTCTGAATTTAATTTGACACCTACTTTTA
ATCTTTTATATATCATCATTAATAATAATCTTCGACATATATTGATTAGAGGGAGTGGAA
ACC
   
Sequence Name 06-K029742-022-054-E07C-FM22
GenBank Accession LN488679 [GenBank]
Sequencing primer gene specific primer, FM22: 5'-TTGGTTTCACTCCCTCTAATCAAT-3'
Sequence (A. th genome BLAST matches underlined)
>06-K029742-022-054-E07C-FM22
TTATGATGATTATAAAGATTAAAAGTAGGTGTCAAATTAAATTCAGACACACTGCGAAAG
AGACATTTACACGTGTTCTCTCTCAAAATTATTGAAGTCGCTGCGATGTCACAAAAGTAT
GAAAAGACTATTTTGTAATTTTATTGAAACTAGATTGATTTCATATATTACATTATTACA
AAGATCCATTCGTGTGAACTACATACTTAAATTTTGATTGAGGAAAGAGTTGACTTTGAC
ATATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTAT
GATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGT
AGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGATAAAACGACAAATTACGAT
CCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTC
GACGTGTCTACATT

Last Updated on 06.12.2018 16:11