Sequences from confirmation amplicon


Confirmation sequences for line 057B09 and hit At1g05830 are shown.
Line ID 057B09
Locus At1g05830 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:1757192
Primers used for PCR IN40 - 8474, show primer details
   
Sequence Name 35-K033542-022-057-B09C-8409
GenBank Accession LN501729 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>35-K033542-022-057-B09C-8409
ATTTACATTGAATAATCCTGTCTATGTAAATTGATACTTGATTTTTGGACAGTTCAAAGG
GGACACTCCATCTGCCTGCTGGAATAAAATATATAATAGGATAAAAAAGATTCAGATTGC
TTCTGATAATCCTGATGTTTTGGGTGAAGGACTTCATGAATCTGGTACAGATATGTTTGG
CTTCTCCAACCCAGAAGTCGATAAACTTATTCAGGTTTGTCTTCTTGAATCTGAAATTAT
ATGTGGTGGTTTTAGTTTTGTCTCCTTTTACTCCTTCATTCACTGAACTCTCAGGAGTTT
TTGGTTAGGTTCTCCGTTGTACTAATTTCGGGACCCTGAAAACTTTGCAGTGCTCTACCC
TTCTGCTTTGAAGTTAAAACGCATAATTAGGCATCTTTTATGTTTGGCGTGGAAGTTTAA
TATAATCAAGCTCTAGGCATTAAATCTTTCTCCTTATCTCTTTGTCGGAGAAATTCTAAC
TCTTATAGAAACTAAGAATGTGTCCTGGTCTGCATTTTATATATGTTGTGCCTATTATAA
GTCTTGACCTGCCATGCAGGGGCTATTACAATCCAGACCACCTTCCAAGGTTTCTCAGCG
CAATTAATAGT
   
Sequence Name 35-K033542-022-057-B09C-IN40
GenBank Accession LN501730 [GenBank]
Sequencing primer gene specific primer, IN40: 5'-GAACTATATTTGCGCTGAGAAACC-3'
Sequence (A. th genome BLAST matches underlined)
>35-K033542-022-057-B09C-IN40
GACTTATAATAGGCACAACATATATAAAATGCAGACCAGGACACATTCTTAGTTTCTATA
AGAGTTAGAATTTCTCCGACAAAGAGATAAGGAGAAAGATTTAATGCCTAGAGCTTGATT
ATATTAAACTTCCACGCCAAACATAAAAGATGCCTAATTATGCGTTTTAACTTCAAAGCA
GAAGGGTAGAGCACTGCAAAGTTTTCAGGGTCCCGAAATTAGTACAACGGAGAACCTAAC
CAAAAACTCCTGAGAGTTCAGTGAATGAAGGAGTAAAAGGAGACAAAACTAAAACCACCA
CATATAATTTCAGATTCAAGAAGACAAACCTGAATAAGTTTATCGACTTCTGGGTTGGAG
AAGCCAAACATATCTGTACCAGATTCATGAAGTCCTTCACCCAAAACATCAGGATTATCA
GAAGCAATCTGAATCTTTTTTATCCTATTATATATTTTATTCCAGCAGGCAGATGGAGTG
TCCCCTTTGAACTGTCCAAAAATCAAGTATCAATTTTACATAGACAGGATATATTCAATT
GTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATAT
GGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAG
CGTTATTATAAAATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCGTATTTA
TAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACA
TTC
Primers used for PCR 09bd - 8474, show primer details
   
Sequence Name 56-K118893-0022-057-B09C-09bd
GenBank Accession LN509252 [GenBank]
Sequencing primer gene specific primer, 09bd: 5'-GAAGGATGGATCAACTTCAGAAAG-3'
Sequence (A. th genome BLAST matches underlined)
>56-K118893-0022-057-B09C-09bd
CTCAACTCGGGTGATGATTACACAAAAGATGGAGAAGTCTGGTTGCGGCCAACAGAACTT
GGAGATTGCTTGCATAGAATAGGCGATCTGCAAATAATTAATCTTGGTAATGTTTGAAAC
TAATTAGTATGTTGGATCATCCTTAGTTGGAATGGACTCTGCTCATTATGGATAGGCGTA
TATCACTTGTCTTTGTCTGCCAGGAAGGATCGTGACAGACTCAGAATTTTTCAAGGATAG
TAAGCATACTTGGCCTGAAGGGTATACAGCTACAAGAAAATTCATATCACTAAAAGGTAA
ATTATTTACCAGTTTTTGTGCTTTCTATATTAATCAGGCAGTTTTGTCTCATATATGCGC
GATTTCTTGCTTTGACTTTAAGCAGATCCTAATGCATCTGCCATGTACAAGATGGAAGTG
CTTAGAGATGCCGAGTCAAAGACTCGCCCTGTTTTCAGAGTGACGACCAATAGCGGTGAG
CAGGTTAGGTTTCTAGGTGGAAAGCTTGTGTGGATAGAAAGTTTGTTATAGGATACTTGA
TGTCCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAA
AAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATT
AT
   
Sequence Name 16-K118892-0022-057-B09C-8409
GenBank Accession LN493643 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>16-K118892-0022-057-B09C-8409
TCAGTATCCTATAACAAACTTTCTATCCACACAAGCTTTCCACCTAGAAACCTAACCTGC
TCACCGCTATTGGTCGTCACTCTGAAAACAGGGCGAGTCTTTGACTCGGCATCTCTAAGC
ACTTCCATCTTGTACATGGCAGATGCATTAGGATCTGCTTAAAGTCAAAGCAAGAAATCG
CGCATATATGAGACAAAACTGCCTGATTAATATAGAAAGCACAAAAACTGGTAAATAATT
TACCTTTTAGTGATATGAATTTTCTTGTAGCTGTATACCCTTCAGGCCAAGTATGCTTAC
TATCCTTGAAAAATTCTGAGTCTGTCACGATCCTTCCTGGCAGACAAAGACAAGTGATAT
ACGCCTATCCATAATGAGCAGAGTCCATTCCAACTAAGGATGATCCAACATACTAATTAG
TTTCAAACATTACCAAGATTAATTATTTGCAGATCGCCTATTCTATGCAAGCAATCTCCA
AGTTCTGTTGGCCGCAACCAGACTTCTCCATCTTTTGTGTAATCATCACCCGAGTTTGAG
CTGTCCTCTTCTCCACTATTAATCCTTTCCGAACAATCAGTATCAGCAACTTTCTGAAGT
TGATNCATCCT

Last Updated on 06.12.2018 16:11