Sequences from confirmation amplicon


Confirmation sequences for line 058E06 and hit At3g48990 are shown.
Line ID 058E06
Locus At3g48990 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:18161386
Primers used for PCR EK05 - 8474, show primer details
   
Sequence Name 53-K021738-022-058-E06C-8409
GenBank Accession LN508012 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>53-K021738-022-058-E06C-8409
CATTTACAATTGAATATATCCTGGATCGCCAAAAAATTCCCCGATCGCCGAGCTCTCTCC
GTTTCTGGAAAATTCAATCTCACTCACGCGCGTCTTCACGATCTAATCGAACGCGCCGCT
TCACGCCTTGTCTCCGACGCTGGAATCAAACCCGGCGATGTCGTTGCTCTCACCTTCCCT
AACACCGTCGAGGTATTTTAAGAGGTTTTCATATATTTCGATTTAAAAGCTTCGTTTCTG
GTTTTGTTTTGCGTGCTGAAGAATCACATGGGAAGCAGAATTTATGAATATCTGTAAATC
GCTTCTTAATTGAGAAATTTTGATTTCCGGATTCAGATGATTTTTTTGGATGAATTTGGT
TTTGATTTTTTTTTTTTGTTTTCAGTTTGTTATAAGGTTTTTA
   
Sequence Name 54-K021738-022-058-E06C-EK05
GenBank Accession LN508344 [GenBank]
Sequencing primer gene specific primer, EK05: 5'-GCTCTTATCACCGCTAAAAACATT-3'
Sequence (A. th genome BLAST matches underlined)
>54-K021738-022-058-E06C-EK05
AAAAAAAAATCAAAACCAAATTCATCCAAAAAAATCATCTGAATCCGGAAATCAAAATTT
CTCAATTAAGAAGCGATTTACAGATATTCATAAATTCTGCTTCCCAGGTGATTCTTCAGC
ACGCAAAACAAAACCAGAAACGAAGCTTTTAAATCGAAATATATGAAAACCTCTTAAAAT
ACCTCGACGGTGTTAGGGAAGGTGAGAGCAACGACTTCCCCGGGTTTGATTCCAGCGTCG
GAAACAAGGCGTGAAGCGGCGCGTTCGATTAAATCGTGAAAACCCCCGTGAGTGAAATTG
AATTTTCCAAAAACGGAAAGAGCTCGGCAATCGGGGAATTTTTTGGCGATCAGGATATAT
TCAATTGTAAAGGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGT
CAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAAATGT
CCGCAGCGTTTTTATAAAATGAAAGTACTTTTTGATAAAACGACAAATTACGATCCGTCG
TATTTATGGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTG
TCTACTT
Primers used for PCR FM37 - 3144, show primer details
   
Sequence Name 84-K029207-022-058-E06C-3144
GenBank Accession LN514372 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>84-K029207-022-058-E06C-3144
CCTTCCTCTATATAAGGATGTTCATTTCATTTGGAGTGGACAGGGTACCCGGGGATCAGA
TTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTTATATTCAATTACTACAGTATCT
GTGGAAGCAAAAAATGGCTAAAAGATGATGCCACGTGTTATCATCGTAGCGGATTTTCTA
TTGATCGTGTGGTCATAATGTTTTCATTTTTAATTATTTTGTTAACGGTGGGAGTCGCTG
ATATATATCCTTACGATTAGACCGACGTTTCGGTTTTTGAAGAGGTGGTTTTTTTAATTT
CGATTCCGGTACAAACACTGAACCGAAACGGCTAGTTAATTAACTTTTGAAAATATTTTT
TTTCGGCAAGCATGCGATAGTAATTTACGGTTTATGAATTATTTCATAGGAATTTGAAAT
AGTTTGTGTATGTATTATCAAACAAAAGAATAGTTTCATTAAAAAAATAGCCTATGAGTG
TTTAATCACTTTTAGGGCCTTTGCACATGTGTCTTTGACTAGGATTATCACGTTTCGAAG
AT
   
Sequence Name 85-K029207-022-058-E06C-FM37
GenBank Accession LN514489 [GenBank]
Sequencing primer gene specific primer, FM37: 5'-TATAAACAACGTCAAGCATCTTCG-3'
Sequence (A. th genome BLAST matches underlined)
>85-K029207-022-058-E06C-FM37
GTGCAAAGGCCCTAAAAGTGATTAAACACTCATAGGCTATTTTTTTAATGAAACTATTCT
TTTGTTTGATAATACATACACAAACTATTTCAAATTCCTATGAAATAATTCATAAACCGT
AAATTACTATCGCATGCTTGCCGAAAAAAAATATTTTCAAAAGTTAATTAACTAGCCGTT
TCGGTTCAGTGTTTGTACCGGAATCGAAATTAAAAAAACCACCTCTTCAAAAACCGAAAC
GTCGGTCTAATCGTAAGGATATATATCAGCGACTCCCACCGTTAACAAAATAATTAAAAA
TGAAAACATTATGACCACACGATCAATAGAAAATCCGCTACGATGATAACACGTGGCATC
ATCTTTTAGCCATTTTTTGCTTCCACAGATACTGTAGTAATTGAATATAAACACTGATAG
TTTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTACCCTGTCCTCTCCAAATGA
AATGAACTTCCTTATATAGAGGAAGGGTCTTGCGAAGGATAGTGGGATTGTGCGTCATCC
CTTACGTCAGTGGAGATATCACATCAATCCACTTGCTTTGAAGACGTGGTTGGAACGTCT
TCTTTTTCCACGATGCTCCTCGTGGG

Last Updated on 06.12.2018 16:11