Sequences from confirmation amplicon


Confirmation sequences for line 058G08 and hit At5g59730 are shown.
Line ID 058G08
Locus At5g59730 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:24065861
Primers used for PCR DN40 - 8474, show primer details
   
Sequence Name 07-K101828-0022-058-G08C-8409
GenBank Accession LN489214 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>07-K101828-0022-058-G08C-8409
GCCATTTCATTGAATAATCCTGAACAGCTGGAGTTTCTCCGGACATGAAGCCATTTACTC
ATTTCTCGACGACTTCCTCTTCTCCACCAACAGTCGTCGTGAAGCAGAGGAGTTTGTTAC
AGCCGTTAGACATCTACAAAGCACGATGCATCGTTTGGTTTCCGTTAACCCTTCCTCGGA
GAAGCTAATCTACGCACAGAATCTAATGCAATCGGCGATGAAGCTTCTCGAATCAGAGTT
TCATCGTGTTTTAAAAGCGAACCGTGAGTATTTAGATCCTGAATGTGTCTCTGTACGTTC
TTACAGATCATCGAGATTCAGTACTTCGACTACGACTAGTGTCTCCGATTCCGAAGACGA
AAGCAGTTACGAAGAAAACGCCGACGAAGAGCATAGATTCTCCGGTGGAGATTCCGACGC
AATGGATGATCTCAAGATGATTGCTGATTGTATGATCTCTACCGGCTACGCTAAGGAATG
CGTTAGGGTTTATAAAACCGTACGGAAATCGATTGTTGATGAGACGCTGCATAATCTGCA
AATGGAGAGATTCAATCTTCATCAGGTTCAGAAAATGGATTGGGAGATTCTCGAATCAAA
GATCAAAACATGGCTAAAAGCTGTGAAATTAGCTGTTAGAAAATTGTTCTTCGGTGAGAG
GATTTTAGCTGATCATGTTTTC
   
Sequence Name 51-K101831-0022-058-G08C-DN40
GenBank Accession LN507453 [GenBank]
Sequencing primer gene specific primer, DN40: 5'-AAACCAGAGGAAGAGAAAACATGA-3'
Sequence (A. th genome BLAST matches underlined)
>51-K101831-0022-058-G08C-DN40
TTTTCTACAGCTAATTTCACAGCTTTTAGCCATGTTTTGATCTTTGATTCGAGAATCTCC
CAATCCATTTTCTGAACCTGATGAAGATTGAATCTCTCCATTTGCAGATTATGCAGCGTC
TCATCAACAATCGATTTCCGTACGGTTTTATAAACCCTAACGCATTCCTTAGCGTAGCCG
GTAGAGATCATACAATCAGCAATCATCTTGAGATCATCCATTGCGTCGGAATCTCCACCG
GAGAATCTATGCTCTTCGTCGGCGTTTTCTTCGTAACTGCTTTCGTCTTCGGAATCGGAG
ACACTAGTCGTAGTCGAAGTACTGAATCTCGATGATCTGTAAGAACGTACAGAGACACAT
TCAGGATCTAAATACTCACGGTTCGCTTTTAAAACACGATGAAACTCTGATTCGAGAAGC
TTCATCGCCGATTGCATTAGATTCTGTGCGTAGATTAGCTTCTCCGAGGAAGGGTTAACG
GAAACCAAACGATGCATCGTGCTTTGTAGATGTCTAACGGCTGTAACAAACTCCTCTGCT
TCACGACGACTGTTGGTGGAGAAGAGGAAGTCGTCGAGAAATGAGTAAATGGCTTCATGT
CCGGAGAAACTCCAGCTGTTCAGGATATATTCAATTGTAAATGGCTTCATGTCCGGGAAA
TCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAANAAGAAAGAGTAATTACC
AATTTTTTTTCAATTCAAAAATGTAGATGTC
Primers used for PCR 04bd - 3144, show primer details
   
Sequence Name 02-K107108-0022-058-G08C-3144
GenBank Accession LN487055 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>02-K107108-0022-058-G08C-3144
GGGGGGAGATCCACTTCCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTG
GAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAG
CAGCCGGAGAAGTCCATTTTGATATGACGGTGTTGATGTTGCTCATACATTCTTGAACAG
CTGATTCCGCGAGAGAGAGATGAGCTGTTGGTTTCTCCGGTGGAGGAGATGATCGGAATA
AATGCTTCCCCATTTTTGTGGTTTGCTCTGTTTTTATTTTTTGGTACCGTCTCTTTTTAT
GTGTGTGAAGAAGAAGGTACTCTGTTTTTTTTTTTGGGTTCCCCTTAAACAAAAAAAAAA
CTTCGGGTTTGTTGTTTGTTTGTTGGGTTTTTGAAACCAAAAAGGGAATTAAATAAAATG
AGGAGGGGGGAGGATT
   
Sequence Name 18-K107113-0022-058-G08C-04bd
GenBank Accession LN494328 [GenBank]
Sequencing primer gene specific primer, 04bd: 5'-ATTCCTCCACCTTCCTCATCTTAT-3'
Sequence (A. th genome BLAST matches underlined)
>18-K107113-0022-058-G08C-04bd
AAACAAACAAACAACAAACCAGAAGTTTTATTTTTGTTAAAGAGTAACCAAAAAAAAAAA
ACAAATTCCCTTTTTTCTTCCCCCCCTTAAAAAAAGCCGGTCCCAAAAATTAAAACCAGA
CCAACCCCCAAAATGGGGAAACCTTTTTTTCCAATCTTCTCCCCCCCCGAAAAAACCAAC
AGCTCATCTTTTTTTCGGGAAATCACTTTTTCAAAAATGTATAACCAACTTCACCCCCGT
CTTATCAAAAGGGACTTCCCCGGCTGCTAATATTTTAACCCAAAGGCGGAAAACAACATT
TTAATCCCCGGGTCCCCTGTCCTCTCCAAATAAAATGAATTTCCTTATATAAAGAAAGGG
TCTTGCAAAGAAAAGGGGAATTGTGCTTCACCCCTTACTTCAGTGGA

Last Updated on 06.12.2018 16:11