Sequences from confirmation amplicon


Confirmation sequences for line 062B07 and hit At1g35515 are shown.
Line ID 062B07
Locus At1g35515 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:13078160
Primers used for PCR DR04 - 8474, show primer details
   
Sequence Name 43-K018968-022-062-B07C-DR04
GenBank Accession LN504680 [GenBank]
Sequencing primer gene specific primer, DR04: 5'-CAGATCTAACAATGAAACGCAAAA-3'
Sequence (A. th genome BLAST matches underlined)
>43-K018968-022-062-B07C-DR04
ATCAAACCGCAATATAAAGAAATCGAGAGAAGAAAACATAAATCTAAACCGGAATCAATC
CGGCCAAAAGGTAGACGAAACACCGAAGATAGGCGGTGAAACTCTAGACCTTAGCTAGCC
TACCGCCGCTAAAGAAGCCAATGGAAGCCAAACGCAAACCGACCATCGTCGTAAAGAACC
GAACAGTGTCAGAAGAACCACGACAATCAAACGTTGCCCTAAACATCGCCGGACAAAAGC
CAGACATCCATGCTGGAAAAGCCATAAGATTCTGGACAGAGAACTGGCCAACAAACACTA
AAGAAGCTATTGTTGCCGGAAAAAGAAGATCAGATGCTTTCTCTCTCTAAAAGATGCAAA
TGAGAGAAGAGAGAGAGAAGCCTACAAAACCTTCTTTTCCATTCAAAACGCATAGAATGC
TATCTTCTCAATACTGGATCTGCTTGTATATAAACCAAATTGTACATTTATTCATTTTTA
TAAACTGAAGAGAAAACCATTTGATTAGTTTTCTCCAGTGTTTTCAAACCGGTTGAACCA
GTTTGACTGTGAATCGAATAGCTATCCGATTTGAGTTATCACCAAAAACCGGTATTAAAA
AGACTCACAACACCCGGTTTAAAATCTGATTAAACCAGTGAACCGGTTCGGACTAATGAC
CAAAACCCGATTCTTCATTTTTTTTA
   
Sequence Name 44-K018968-022-062-B07C-8409
GenBank Accession LN505033 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>44-K018968-022-062-B07C-8409
TCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGGTCCGGGAAAT
CTACATACTCTTTCTTTTACCTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTG
AAGAGCAAATCATTGTCAAACTTCATAGTTTATTTGGCAACAAGTAATTTCCTTTCTCTT
AATTATGATTTATGAACAAACCAGTTTTACTGTAAAAAAGTAAAACCAATGGTTAAACCG
TGAAAGACTAAAAAAAATGAAGAATCGGGTTTTGGTCATTAGTCCGAACCGGTTCACTGG
TTTAATCAGATTTTAAACCGGGTGTTGTGAGTCTTTTTAATACCGGTTTTTGGTGATAAC
TCAAATCGGATAGCTATTCGATTCACAGTCAAACTGGTTCAACCGGTTTGAAAACACTGG
AGAAAACTAATCAAATGGTTTTCTCTTCAGTTTATAAAAATGAATAAATGTACAATTTGG
TTTATATACAAGCAGATCCAGTATTGAGAAGATAGCATTCTATGCGTTTTGAATGGAAAA
GAAGGTTTTGTAGGCTTCTCTCTCTCTTCTCTCATTTGCATCTTTTAGAGAGAGAAAGCA
TCTGATCTTCTTTTTCCGGCAACAATAGCTTCTTTAGTGTTTGTTGGCCAGTTCTCTGTC
CAGAATCTTATGGCTTTTCCAGCATGGATGTCTGGCTTTTGTCCGGCGATGTTTAGGGCA
ACGTTTGATTGT
Primers used for PCR FM44 - 8474, show primer details
   
Sequence Name 31-K029743-022-062-B07C-8409
GenBank Accession LN500032 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>31-K029743-022-062-B07C-8409
ACTTTTTCCACAACGCAACAACCCTAAAGAAAAGATAAAATCATCAGATCAAGAAACATA
AAAATTTGAAAGAAAAAAAATCAAAACTTTGGAGAAATTTACCAACGGATTTAGGAAGAG
AACGCCAAGAGCCTTCACCATGATTACGTATATAATCAATAAGACGTTGATCTTCTTCTT
TAGTCCATGCTCCTTTGTTCATGTGAGCCTTTTCACAACATGGTGATCTTCCCATGATGA
TGGTTACATGTGTGGGTGATGAGACAAGAAGAGTGAGACTAGGATCTAAAGAGAGGTGTT
ATAAAAAGGAAGTGACTTTGACCAAGTTGGTGTATGTATCTTGTATTTTGTGGGTGAAAA
AGATTTGGTAGGTTACCTTCTTTTTCTTTCTTTCCT
   
Sequence Name 32-K029743-022-062-B07C-FM44
GenBank Accession LN500455 [GenBank]
Sequencing primer gene specific primer, FM44: 5'-ATGGACATGCTCTAAGGAAAGAAA-3'
Sequence (A. th genome BLAST matches underlined)
>32-K029743-022-062-B07C-FM44
TTTTCCCCACAAAATACAAGATACATACACCAACTTGGTCAAAGTCACTTCCTTTTTATA
ACACCTCTCTTTAGATCCTAGTCTCACTCTTCTTGTCTCATCACCCACACATGTAACCAT
CATCATGGGAAGATCACCATGTTGTGAAAAGGCTCACATGAACAAAGGAGCATGGACTAA
AGAAGAAGATCAACGTCTTATTGATTATATACGTAATCATGGTGAAGGCTCTTGGCGTTC
TCTTCCTAAATCCGTTGGTAAATTTCTCCAAAGTTTTGATTTTTTTTCTTTCAAATTTTT
ATGTTTCTTGATCTGATGATTTTATCTTTTCTTTAGGGTTGTTGCGTTGTGGAAAAAGTT
GTAGATTAAGATGGCTTCATAACATGGATCAAGCAATGAGTATGATGGTCAATATGGAGA
AAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTA
TTATAAAATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGC
GAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTC
Primers used for PCR NS39 - 8474, show primer details
   
Sequence Name 61-K113009-0022-062-B07C-NS39
GenBank Accession LN510566 [GenBank]
Sequencing primer gene specific primer, NS39: 5'-ATGGACATGCTCTAAGGAAAGAAA-3'
Sequence (A. th genome BLAST matches underlined)
>61-K113009-0022-062-B07C-NS39
GATACATACACCAGACTTGGTCAAGTCACTTCCTTTTTATAACACCTCTCTTTAGATCCT
AGTCTCACTCTTCTTGTCTCATCACCCACACATGTAACCATCATCATGGGAAGATCACCA
TGTTGTGAAAAGGCTCACATGAACAAAGGAGCATGGACTAGAGAAGAAGATCAGCGTCTT
ATTGATTATATACGTAATCATGGTGAAGGCTCTTGGCGTTCTCTTCCTAAATCCGTTGGT
AAATTTCTCCAAAGTTTTGATTTTTTTTCTTTCAAATTTTTATGTTTCTTGATCTGATGA
TTTTATCTTTTCTTTAGGGTTGTTGCGTTGTGGAAAAAGTTGTAGATTAAGATGGCTTCA
TAACATGGATCAAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACC
AATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTA
   
Sequence Name 57-K113008-0022-062-B07C-8409
GenBank Accession LN509472 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>57-K113008-0022-062-B07C-8409
ACTTTTTCCCACGCAACAACCCTAAAGAAAAGATAAAATCATCAGATCAAGAAACATAAA
AATTTGAAAGAAAAAAAATCAAAACTTTGGAGAAATTTACCAACGGATTTAGGAAGAGAA
CGCCAAGAGCCTTCACCATGATTACGTATATAATCAATAAGACGTTGATCTTCTTCTTTA
GTCCATGCTCCTTTGTTCATGTGAGCCTTTTCACAACATGGTGATCTTCCCATGATGATG
GTTACATGTGTGGGTGATGAGACAAGAAGAGTGAGACTAGGATCTAAAGAGAGGTGTTAT
AAAAAGGAAGTGACTTTGACCAAGTTGGTGTATGTATCTTGTATTTTGTGGGTGAAAAAG
ATTTGGTAGGTTACCTTCTTTTTCTTTCTTTCCTTAGAGCATGTCCA

Last Updated on 06.12.2018 16:11