Sequences from confirmation amplicon


Confirmation sequences for line 143E09 and hit At1g59870 are shown.
Line ID 143E09
Locus At1g59870 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:22036446
Primers used for PCR VL58 - 8474, show primer details
   
Sequence Name 07-K024722-022-143-E09C-8409
GenBank Accession LN489096 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>07-K024722-022-143-E09C-8409
AATTTCCCGGACATGAAGCCATTTACAATTGAAGCCATGTAGATACAAGAGTTTCCATGT
TGGGACGAAGATGTCTAACGAACTTGCAGTACCGTTCGATAAGTCTCGCGGCCACAAAGC
AGCTCTTGTGTTCGATAAGTACTCTGTCTCAAAGAGGGAGCTTCTCAAGAGCTGTTGGGA
CAAAGAGTGGCTGCTTATGCAGCGAAACGCGTTCTTCTATGTTTTCAAGACTGTCCAGAT
CGTCATCATTGCTGCAATCACGTCTACACTCTTCCTGAGAACCGAAATGAACACAAGAAA
CGAGGGTGATGCTAATCTCTACATAGGAGCATTGCTATTTGGAATGATCATCAACATGTT
TAATGGGTTTGCGGAGATGGCTATGATGGTTTCAAGACTCCCTGTGTTCTACAAACAGAG
GGATCTCTTGTTTTATCCATCCTGGACCTTCTCACTTCCCACTTTCTTGCTTGGGATTCC
AAGCTCAATATTAGAATCGACGGCTTGGATGGTGGTGACTTATTACTCCATTGGTTTTGC
ACCTGACGCCAGCCGCTTCTTCAAGCAGTTTC
   
Sequence Name 08-K024722-022-143-E09C-VL58
GenBank Accession LN489560 [GenBank]
Sequencing primer gene specific primer, VL58: 5'-TTGTTGAATCAGAAACACCAGAAG-3'
Sequence (A. th genome BLAST matches underlined)
>08-K024722-022-143-E09C-VL58
TGCTTGAAGAAGCGGCTGGCGTCAGGTGCAAAACCAATGGAGTAATAAGTCACCACCATC
CAAGCCGTCGATTCTAATATTGAGCTTGGAATCCCAAGCAAGAAAGTGGGAAGTGAGAAG
GTCCAGGATGGATAAAACAAGAGATCCCTCTGTTTGTAGAACACAGGGAGTCTTGAAACC
ATCATAGCCATCTCCGCAAACCCATTAAACATGTTGATGATCATTCCAAATAGCAATGCT
CCTATGTAGAGATTAGCATCACCCTCGTTTCTTGTGTTCATTTCGGTTCTCAGGAAGAGT
GTAGACGTGATTGCAGCAATGATGACGATCTGGACAGTCTTGAAAACATAGAAGAACGCG
TTTCGCTGCATAAGCAGCCACTCTTTGTCCCAACAGCTCTTGAGAAGCTCCCTCTTTGAG
ACAGAGTACTTATCGAACACAAGAGCTGCTTTGTGGCCGCGAGACTTATCGAACGGTACT
GCAAGTTCGTTAGACATCTTCGTCCCAACATGGAAACTCTTGTATCTACATGGCTTCAAT
TGTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATA
TGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCA
GCGTTATTATAAAATGAAAGTACATTTTGATAA
Primers used for PCR AJ04 - 3144, show primer details
   
Sequence Name 01-K105456-0022-143-E09C-AJ04
GenBank Accession LN486573 [GenBank]
Sequencing primer gene specific primer, AJ04: 5'-TTTGCAAAGACACAATAGTTGGAG-3'
Sequence (A. th genome BLAST matches underlined)
>01-K105456-0022-143-E09C-AJ04
AGAACGTGTCACAACTGGTGAGATGATTGTTGGACCTACTAAGACACTCTTCATGGACGA
AATATCCACTGGTCTTGACAGTTCCACTACTTTCCAAATCGTCAAGTGTCTGCAACAAAT
CGTTCACCTCAATGAAGCCACGGTGCTCATGTCTCTCCTCCAGCCTGCTCCTGAGACTTT
TGATTTATTCGATGATATCATCTTGGTGTCGGAAGGTCAGATCGTGTACCAAGGACCGAG
AGACAACATTCTTGAGTTCTTTGAGAGCTTTGGGTTCAAGTGTCCTGAGAGAAAAGGAAC
AGCTGATTTCCTGCAAGAGGTTACTTCCAAGAAAGATCAAGAACAGTACTGGGTGAACCC
GAACAGACCTTATCACTACATTCCGACAATCTGATCCCCGGGTACCCTGTCCTCTCCAAA
TGAAATGAACTTCCTTATATAGAGGAAGGGTCTTGCGAAGGATAGTGGGATTGTGCGTCA
TCCCTTACGTCAGTGGAGATATCACATCAATCCA
   
Sequence Name 17-K105457-0022-143-E09C-3144
GenBank Accession LN493850 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>17-K105457-0022-143-E09C-3144
CCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGACAGGACAGGGTACC
CGGGGATCAGATTGTCGGAATGTAGTGATAAGGTCTGTTCGGGTTCACCCAGTACTGTTC
TTGATCTTTCTTGGAAGTAACCTCTTGCAGGAAATCAGCTGTTCCTTTTCTCTCAGGACA
CTTGAACCCAAAGCTCTCAAAGAACTCAAGAATGTTGTCTCTCGGTCCTTGGTACACGAT
CTGACCTTCCGACACCAAGATGATATCATCGAATAAATCAAAAGTCTCAGGAGCAGGCTG
GAGGAGAGACATGAGCACCGTGGCTTCATTGAGGTGAACGATTTGTTGCAGACACTTGAC
GATTTGGAAAGTAGTGGAACTGTCAAGACCAGTGGATATTTCGTCCATGAAGAGTGTCTT
AGTAGGTCCAACAATCATCTCACCAGTTGTGACACGTTTCTTCTGACCTCCAGATATACC
TCTCATCATGTCATCTCCAACTATTGTGTCTTTGCAA

Last Updated on 06.12.2018 16:11