Sequences from confirmation amplicon


Confirmation sequences for line 204C07 and hit At5g61790 are shown.
Line ID 204C07
Locus At5g61790 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:24829217
Primers used for PCR 11aq - 8474, show primer details
   
Sequence Name 12-K106771-0022-204-C07C-8409
GenBank Accession LN491596 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>12-K106771-0022-204-C07C-8409
TTGAATATGTTAATCAATTCTGATTTGGTGCTTTTTTGGTTATCAAATCGAATATGTTCC
TCTTGTTGAAGACTTGAAGTTGTTGATGATTTTCCATTTTTGCATTGAAGCTTCTTGTTA
AAGACGATTTTATCTGTTTCAGGTGTATGGAAGCATGCAAAGAGTGAAGGACATGAGGAT
TATGGACTTCTCGTGAGTGAGAAGGCTAGGAAGTATGGAATTGTGAAAGAGCTTGACGAG
CCTCTAAACCTCAAGGAAGGAACTGTTGTTCTTCAGTACGAGGTTCGTTTCCAGGAAGGA
CTTGAGTGTGGTGGTGCTTACTTGAAGTACCTCCGTCCTCAGGAAGCTGGATGGACACCT
CAGGGATTCGATAGTGAATCCCCTTACTCTATCATGTTTGGGCCTGACAAGTGTGGAGGT
ACGAACAAAGTGCATTTCATCTTGAAGCACAAGAATCCCAAGAGTGGCGAGTACGTTGAA
CACCATCTGAAGTTCCCTCCCTCTGTTCCTTATGACAAGCTTTCCCATGTCTACACCGCC
ATCTTGAAACCCGACAACGAGGTTAGAATTTTGGTTGATGGAGAGGAGAAGAAAAAGGCC
AATTTACTC
   
Sequence Name 28-K106772-0022-204-C07C-11aq
GenBank Accession LN498865 [GenBank]
Sequencing primer gene specific primer, 11aq: 5'-GTCTTCACCAGAGAGTAAATTGGC-3'
Sequence (A. th genome BLAST matches underlined)
>28-K106772-0022-204-C07C-11aq
CAAATTCTACCTCGTTGTCGGGTTTCAGATGGCGGTGTAGACATGGGAAAGCTTGTCATA
AGGAACAGAGGGAGGGAACTTCAGATGGTGTTCAACGTACTCGCCACTCTTGGGATTCTT
GTGCTTCAAGATGAAATGCACTTTGTTCGTACCTCCACACTTGTCAGGCCCAAACATGAT
AGAGTAAGGGGATTCACTATCGAATCCCTGAGGTGTCCATCCAGCTTCCTGAGGACGGAG
GTACTTCAAGTAAGCACCACCACACTCAAGTCCTTCCTGGAAACGAACCTCGTACTGAAG
AACAACAGTTCCTTCCTTGAGGTTTAGAGGCTCGTCAAGCTCTTTCACAATTCCATACTT
CCTAGCCTTCTCACTCACGAGAAGTCCATAATCCTCATGTCCTTCACTCTTTGCATGCTT
CCATACACCTGAAACAGATAAAATCGTCTTTAACAAGAAGCTTCAATGCAAAAATGGAAA
ATCATCAACAACTTCAAGTCTTCAACAAGAGGAACATATTCGATTTGATAACCAAAAAAG
CACCAAATCAGAATTGATTAACATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCTA
CATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATT
TTTTTTCAATTCAAAAATGTAGATATCCGCA
Primers used for PCR 11bg - 3144, show primer details
   
Sequence Name 42-K107114-0022-204-C07C-3144
GenBank Accession LN504479 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>42-K107114-0022-204-C07C-3144
TCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGAC
AGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTATTAACATCCAAATCAGATT
TGATTCAAACTACTCGATTTGATTCCTCTATAATGTTGAGTGCAATACATCACAGTAAGT
AAGTAGTAATTGAATTCCAAATACAGATATAGATCAGAACGATACACTAACTACAATGCA
GTGGGAATTCAAAGACAATAATATACCTTCGTAATCACTATTCTTCGAAACGATCCAGCG
GCCATCAAAAGGCTCATCGAACGATTCATACAGAACCTGAAACAGAAACGAGAATCCAAA
ACCAAACGAACTCAGCTAAACAATGATCGATCTAAATCTTCGGATCTACAAAGAACAGAG
GAAGAATCGAAATTACCGTTTGATCGTCACAGTAGCAAAGCTTCTGGAACGAAACGAAAG
CTAAAANNAAGCAA
   
Sequence Name 58-K107115-0022-204-C07C-11bg
GenBank Accession LN509718 [GenBank]
Sequencing primer gene specific primer, 11bg: 5'-TTTGCTTCTCTTAGCTTTCGTTTC-3'
Sequence (A. th genome BLAST matches underlined)
>58-K107115-0022-204-C07C-11bg
ATCAACGGTAATTTCGATTCTTCCTCTGTTCTTTGTAGATCCGAAGATTTAGATCGATCA
TTGTTTAGCTGAGTTCGTTTGGTTTTGGATTCTCGTTTCTGTTTCAGGTTCTGTATGAAT
CGTTCGATGAGCCTTTTGATGGCCGCTGGATCGTTTCGAAGAATAGTGATTACGAAGGTA
TATTATTGTCTTTGAATTCCCACTGCATTGTAGTTAGTGTATCGTTCTGATCTATATCTG
TATTTGGAATTCAATTACTACTTACTTACTGTGATGTATTGCACTCAACATTATAGAGGA
ATCAAATCGAGTAGTTTGAATCAAATCTGATTTGGATGTTAATACCGAAGGCGGGAAACG
ACAATCTGATCCCCGGGTACCCTGTCCTCTCCAAATGAAATGAACTTCCTTATATAGAGG
AAGGGTCTTGCGAAGGATAGTGGGATTGTGCGTCATCCCTTACGTCAGTGGAGATATCAC
TTCAATCCA

Last Updated on 06.12.2018 16:11