Sequences from confirmation amplicon


Confirmation sequences for line 211A01 and hit At1g26700 are shown.
Line ID 211A01
Locus At1g26700 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:9231539
Primers used for PCR VL32 - 8474, show primer details
   
Sequence Name 29-K020888-022-211-A01C-8409
GenBank Accession LN499101 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>29-K020888-022-211-A01C-8409
TAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCATGTAGATATGTTCATAT
ATTGGCATAATCTATTCTTGTTTCTTCAGTGGCAATTTGGATACAATTCTTGCTTCCTAA
GGAACCATTTACTTGTCTACTTGCGACTTATTCTAGGGTAATCAAGTTTTCTCGTTTAAG
TCATGAGACTATTGTGTATTTATATCGTTTGGACGGTTTATTAATTTCTTATGTTTTGTA
GGTTTTCTGGACAATTTTTATGTAGCTACAGCACACTGCCACTCTATGCACTTGTCACTC
AGGTAACATTTTCAGGAAAAAAAAACTTTTGGAGCTTCTGCTTAATTACAATAGTTCTTA
TAACTCATAAAACAAGCTAAGATAATGTTAATTACAGATGGGAACAAACTACAAGGCAGC
ATTGTTACCT
   
Sequence Name 30-K020888-022-211-A01C-VL32
GenBank Accession LN499539 [GenBank]
Sequencing primer gene specific primer, VL32: 5'-CTTACCCTTTGAGGTAACAATGCT-3'
Sequence (A. th genome BLAST matches underlined)
>30-K020888-022-211-A01C-VL32
GCCTTGTAGTTTGTTCCCATCTGTAATTAACATTATCTTAGCTTGTTTTATGAGTTATAA
GAACTATTGTAATTAAGCAGAAGCTCCAAAAGTTTTTTTTTCCTGAAAATGTTACCTGAG
TGACAAGTGCATAGAGTGGCAGTGTGCTGTAGCTACATAAAAATTGTCCAGAAAACCTAC
AAAACATAAGAAATTAATAAACCGTCCAAACGATATAAATACACAATAGTCTCATGACTT
AAACGAGAAAACTTGATTACCCTAGAATAAGTCGCAAGTAGACAAGTAAATGGTTCCTTA
GGAAGCAAGAATTGTATCCAAATTGCCACTGAAGAAACAAGAATAGATTATGCCAATTAT
ATGAACATATCTACATGGATATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCTACA
TGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTT
TTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGAT
AAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAA
TTCGGAAATTTTATTTTCGACGTGTCTA
Primers used for PCR 78wr - 8474, show primer details
   
Sequence Name 83-K118629-0022-211-A01C-78wr
GenBank Accession LN514358 [GenBank]
Sequencing primer gene specific primer, 78wr: 5'-GCTATATGATCCGCTCTATGGAAG-3'
Sequence (A. th genome BLAST matches underlined)
>83-K118629-0022-211-A01C-78wr
CTTTTTCCTTAGGAAAATAGTGTGGTGCATTTTCTTAACTTTATACTTGTAGGACTTCTT
TTCTCTCTTGTTCCAAGTTTAACTTACTTTCATATAAAACTTTTAGCCATTATTCATTCA
ACTTACAAATTAATTGATTTTATACCAAAAATTATGTTGAGTAGATTGTAATGATGTATT
TTTTTTTATGATCTTTTGCAGTGGGCCACTTTGGGGTTTTGTAGTTGGTTTCATGCTTTT
CAACATAAAAGGTACGCATATAATGTATTAATAATAAATTATAACACTGCATAAATCATA
GTGCAAAGTACTTATGAATTAATACTCTTTTGTATGTCGTTTTAAGAGTTTATTTGATAT
TATAATGTAGGATCAAATCTTTATTTCTGGCTAGCGATCATTCCAATCACTGTAAGAACT
ATTTTTCCACTTCATGTTTCTATGTTTTTGTTTTTCCTTAGAAAGTGAGTCTTATATCAT
AACAAATTTCCACTTTGGTTTGCATCCCTTTCTTTTGAACAGCTTGTTCTTTTGGTTGGT
GCAAAGTTGCAACATGTCATCGCAACTTTAGCATTGGAGAACGCTAGTATAACAGAATAT
GCTTCTGGTATAAAGCTGAGACCTCGCGATGAACTTTTTTGGTTCAAGAAACCGGAATTA
CTCTTATCCCTTATCCACTTCATTCAGTTTCAGGTCTGTATAATTCTTTGAAAACTCTAT
CAGTCACAAAGGAATTTCTTATTTTGTAATAACATATATATGTGCTTTCTGTGTCCTACA
GAATGCTTTTGAACTGGCTTCTTTCTTCTGGTTTTGGGTAAGTTTTTGTCTTTCTATCAT
CTTTTTGCCATATATGCAAGATAAGAAATACATATAGTATACTCTTACGCTTTAAAGATA
TGTTCATATATTGGCATAATCTATTCAATTGTAAATGGC
   
Sequence Name 64-K118628-0022-211-A01C-8409
GenBank Accession LN511298 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>64-K118628-0022-211-A01C-8409
GCCATTTCAATTGAATAGATTATGCCAATATATGAACATATCTTTAAAGCGTAAGAGTAT
ACTATATGTATTTCTTATCTTGCATATATGGCAAAAAGATGATAGAAAGACAAAAACTTA
CCCAAAACCAGAAGAAAGAAGCCAGTTCAAAAGCATTCTGTAGGACACAGAAAGCACATA
TATATGTTATTACAAAATAAGAAATTCCTTTGTGACTGATAGAGTTTTCAAAGAATTATA
CAGACCTGAAACTGAATGAAGTGGATAAGGGATAAGAGTAATTCCGGTTTCTTGAACCAA
AAAAGTTCATCGCGAGGTCTCAGCTTTATACCAGAAGCATATTCTGTTATACTAGCGTTC
TCCAATGCTAAAGTTGCGATGACATGTTGCAACTTTGCACCAACCAAAAGAACAAGCTGT
TCAAAAGAAAGGGATGCAAACCAAAGTGGAAATTTGTTATGATATAAGACTCACTTTCTA
AGGAAAAACAAAAACATAGAAACATGAAGTGGAAAAATAGTTCTTACAGTGATTGGAATG
ATCGCTAGCCAGAAATAAAGATTTGATCCTACATTATAATATCAAATAAACTCTTAAAAC
GACATACAAAAGAGTATTAATTCATAAGTACTTTGCACTATGATTTATGCAGTGTTATAA
TTTATTATTAATACATTATATGCGTACCTTTTATGTTGAAAAGCATGAAACCAACTACAA
AACCCCAAAGTGGCCCACTGCAAAAGATCATAAAAAAAAATACATCATTACAATCTACTC
AACATAATTTTTGGTATAAAATCAATTAATTTGTAAGTTGAATGAATAATGGCTAANAGT
TTTATATGAAAGTAAGTTAAACTTGGAACAAGAGAGAAAAGAAGTCCTACAAGTATAAAG
TAAAGAAAATGCACCACACTATTTT

Last Updated on 06.12.2018 16:11