Sequences from confirmation amplicon


Confirmation sequences for line 242H10 and hit At1g17830 are shown.
Line ID 242H10
Locus At1g17830 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:6137547
Primers used for PCR NC22 - 8474, show primer details
   
Sequence Name 26-K101218-0022-242-H10C-8409
GenBank Accession LN497847 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>26-K101218-0022-242-H10C-8409
GATTATTGCTGTGGTGTATATTTATGAACAGTATTTAATATGTGGAGTATAGTTAGCTTT
ATATCACTAAACACATGGGGCTTTAATTGTTTAAAAAGCTACTTAAACTTTGATGTTAAT
TTGCAGAGCTGCAAGAATGATTTGAACAGTTTGTGGATCCATGAGAACAAAGATGAGATT
GAATATTTCAGGCTTAGTGATCTTTGGGACTGTTTTGATGAGCCAAGCGCGTATGGACTT
GGATCAAAGGTCGACTTAAACAATGGTGAATCCGTTATGCAGTACTATGTCCCGTATCTA
TCCGCCATTCAAATCTATACTAACAAATCTACAGCCATTTCTAGGTTTGATCTATTACAT
ATAAAGAGTGTTGTTCTATATATGTGTCAGTGTCAAGGAACTTGAGGAGTGAATCATTGG
TTTTTGCAGGATTCATAGTGATGTGGTTGATTGTGAGAG
   
Sequence Name 26-K101225-0022-242-H10C-NC22
GenBank Accession LN497848 [GenBank]
Sequencing primer gene specific primer, NC22: 5'-ACTCTCACAATCAACCACATCACT-3'
Sequence (A. th genome BLAST matches underlined)
>26-K101225-0022-242-H10C-NC22
AACATGATTCCTCCTCAGTTCCTTGACACTGACCATATATAGAACAACACTCTTTATATG
TAATAGATCAAACCTAGAAATGGCTGTAGATTTGTTAGTATAGATTTGAATGGCGGATAG
ATACGGGACATAGTACTGCATAACGGATTCACCATTGTTTAAGTCGACCTTTGATCCAAG
TCCATACGCGCTTGGCTCATCAAAACAGTCCCAAAGATCACTAAGCCTGAAATATTCAAT
CTCATCTTTGTTCTCATGGATCCACAAACTGTTCAAATCATTCTTGCAGCTCTGCAAATT
AACATCAAAGTTTAAGTAGCTTTTTAAACAATTAAAGCCCATGTGTTTAGTGATATAAAG
CTAACTATACTCCACATATTAAATACTGTTCATAAATATACACCACATGCAATTAATCGC
ACATTTAATTAATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTA
CCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGC

Last Updated on 06.12.2018 16:11