Sequences from confirmation amplicon


Confirmation sequences for line 252D03 and hit At4g14690 are shown.
Line ID 252D03
Locus At4g14690 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr4:8419195
Primers used for PCR DE25 - 8474, show primer details
   
Sequence Name 18-K021167-022-252-D03C-8409
GenBank Accession LN494126 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>18-K021167-022-252-D03C-8409
CATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATTTCCGGTGAAGGCCAACG
CAACGAGACCGAGCATCGCAAACCGACCGTTCCATAGCTCGGCGTCTGAAGTCATGAACC
CTTTTGACTTTGCCTCTGCCCTTATTCCCTTGAACAACGGAACCATCGATGCCAACGTCA
ACAACGCTGTTGTTCCTAGAAACCACCCGACACCACCGTCAGAGATCTGAGCAAACACGT
TTTCTCCCTTTGATAACTCCATGGCGATGGCCGCCACGAATCCAACCATTGCTAGTCTCC
CGTTGATCCTCTCGGGTGCTGGACCGCTAAACGCTAGCAAATCTCCAAACTT
   
Sequence Name 22-K021167-022-252-D03C-DE25
GenBank Accession LN495927 [GenBank]
Sequencing primer gene specific primer, DE25: 5'-GGTGAGTACGAAGTTTGGAGATTT-3'
Sequence (A. th genome BLAST matches underlined)
>22-K021167-022-252-D03C-DE25
CGTTTAGCGGCTCCAGCACCCGAGAGGATCAACGGGCAGACTAGCAATGGTTGGATTCGT
GGCGGCCATCGCCATGGAGTTATCAAAGGTGAGAAAACGTGTTTGCTCAGATCTCTGACG
GTGGTGTCGGGTGGTTTCTAGGAACAACAGCGTTGTTGACGTTGGCATCGATGGTTCCGT
TGTTCAAGGGAATAAGGGCAGAGGCAAAGTCAAAAGGGTTCATGACTTCAGACGCCGAGC
TATGGAACGGTCGGTTTGCGATGCTCGGTCTCGTTGCGTTGGCCTTCACCGGAAATATTC
AATTGTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCA
ATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATG
Primers used for PCR 49xd - 8474, show primer details
   
Sequence Name 47-K119004-0022-252-D03C-49xd
GenBank Accession LN506351 [GenBank]
Sequencing primer gene specific primer, 49xd: 5'-ACGAAATGATGCTACTCAAAACG-3'
Sequence (A. th genome BLAST matches underlined)
>47-K119004-0022-252-D03C-49xd
TCAATCTTTCCGATTATATTCATCGATCGTACTATCGTGTAGTGTTGTAGTGGCCAGATC
TTTCCTCTTTTAAGTGTTTTTTTGTTTGTTCATCTTAATATATTTTTTTTTGTTCTTGGG
AAGCATTGACGCTTTGATTGGGCTTTGATGAGACTAACCCATGGGCTTGAGAATTGAGAT
GAGGTGATTTGTTAGAGAGAAATCGCATTCAATTTCGTTTCGTCTTGGAACTTGCTTTAC
TTTCATTATGGCAGACACATGATGACTCTATTGGTCGATAATAACAAGGAAGAGCATAAT
TAATTATTCTTGGCTCTTGATTCATTTCAAAAGAATGCATAAACTCTCAAACCTTGGATA
GAAGCTAAAATTTATTTTTTACTTCTTCTTCTCCATTCACATTATCTTATAAGAAAACTT
TTGAAGTACTTTTTCAAATAAATTTTTATAATGTTTTTTTCATGGTTTTAAATTTTGATT
CATGTTGACACACTGTTTAAAACTCATAGTATTAAATCTTTCTTTTTCAGGATATATTCA
ATTGTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAA
TATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATG
   
Sequence Name 30-K119003-0022-252-D03C-8409
GenBank Accession LN499934 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>30-K119003-0022-252-D03C-8409
CATTTACATTGAATTATCCTGAAAAAGAAAGATTTAATACTATGAAGTTTTAACAGTGTG
TCAACATGAATCAAAATTTAAAACCATGAAAAAAACATTATAAAAATTTATTTGAAAAAG
TACTTCAAAAGTTTTCTTATAAGATAATGTGAATGGAGAAGAAGAAGTAAAAAATAAATT
TTAGCTTCTATCCAAGGTTTGAGAGTTTATGCATTCTTTTGAAATGAATCAAGAGCCAAG
AATAATTAATTATGCTCTTCCTTGTTATTATCGACCAATAGAGTCATCATGTGTCTGCCA
TAATGAAAGTAAAGCAAGTTCCAAGACGAAACGAAATTGAATGCGATTTCTCTCTAACAA
ATCACCTCATCTCAATTCTCAAGCCCATGGGTTAGTCTCATCAAAGCCCAATCAAAGCGT
CAATGCTTCCCAAGAACAAAAAAAAATATATTAAGATGAACAAACAAAAAAACACTTAAA
AGAGGAAAGATCTGGCCACTACAACACTACACGATAGTACGATCGATGAATATAATCGGA
AAGATTTGAGTGGCTCAATTACATATTGCTTATACGACGTCGTTTTGAGTAGCATCATTT
C

Last Updated on 06.12.2018 16:11