Sequences from confirmation amplicon


Confirmation sequences for line 259F08 and hit F10K1 are shown.
Line ID 259F08
Locus F10K1 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:2197679
Primers used for PCR DL83 - 8474, show primer details
   
Sequence Name 17-K018601-022-259-F08C-DL83
GenBank Accession LN493667 [GenBank]
Sequencing primer gene specific primer, DL83: 5'-TGATGAACGAAACAGAATTGAGAG-3'
Sequence (A. th genome BLAST matches underlined)
>17-K018601-022-259-F08C-DL83
AATTCTTGCAAAAGAAGTTACTGTTAGGTTTTATCATGATTACATGGTTCTGATTACGAT
AATCCTGCAGGGCGGTTATGTGGATACATTCAATAGTGTTTGGAGAATTCAAGGATCATT
AGCGGTATCTAGAGGAATAGGAGATGCTCATCTCAAACAATGGATAATATCTGAACCAGA
GATAAATATTCTCCGAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGATGGTCT
ATGGGACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCAAAGGGAC
CGATCAGAAACGGAAGCCATTGCTGGCTTGCAAGAAGCTCGTTGACCTCTCTGTATCACG
AGGCTCCTTGGACGATATTAGTGTGATGTTGATTCAGTTGTGCCACCTCTTCTGACCATA
GGAGAAATGTAGAGACAGAATAACAACGTTNGAGTCTGAAGTCATTCTTAATTTCTTACA
TTTTATTTTTTATTGTTTTCTAAGCATTCACTGTGAATGATTCACATATTCTTTTATTCG
TTTTTAACTTCATTTAGTCATTTGAGCTGTTATGATACTTGTGTATACCATCTTAGACTG
TCTTTACTCTCTATTGATAATCCTTATAGCCTTATAGGTCTTCTATGTAAAAACTCGTTA
AGGCTTGTAAGTTGTATGTGAGTACTTTACCACTCAATACATTATATATTACTA
   
Sequence Name 18-K018601-022-259-F08C-8409
GenBank Accession LN494112 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>18-K018601-022-259-F08C-8409
CATGTAGATTTCTCAGCATATAAACGTAAAAGTAAAAAACTTTCAAAACATGAATTTTAT
GAACTCTTGAAACAAACCAGTACTAGCCTACACATTTAAGTCGATCCACATTATCTCATA
AAAGAGTAGTAATATATAATGTATTGAGTGGTAAAGTACTCACATACAACTTACAAGCCT
TAACGAGTTTTTACATAGAAGACCTATAAGGCTATAAGGATTATCAATAGAGAGTAAAGA
CAGTCTAAGATGGTATACACAAGTATCATAACAGCTCAAATGACTAAATGAAGTTAAAAA
CGAATAAAAGAATATGTGAATCATTCACAGTGAATGCTTAGAAAACAATAAAAAATAAAA
TGTAAGAAATTAAGAATGACTTCAGACTCTAACGTTGTTATTCTGTCTCTACATTTCTCC
TATGGTCAGAAGAGGTGGCACAACTGAATCAACATCACACTAATATCGTCCAAGGAGCCT
CGTGATACAGAGAGGTCAACGAGCTTCTTGCAAGCCAGCAATGGCTTCCGTTTCTGATCG
GTCCCTTTGCAAAATGGTCGAGCTATGTCTACTGCCTCCTGATTACTAACCTTGTCCCAT
AGACCATCTGATGCTAAGATCAAGAACTCGTGTTGGGGATTGATTCGGAGAATATTTATC
TCTGGTTCAGATATTATCCATTGTTTGAGATGAGCATCTCCTATTCCTCTAGATACCGCT
NATGATCCTTGAATTCTCCAAACACTATTGAATGTAT
Primers used for PCR 96vo - 8474, show primer details
   
Sequence Name 26-K117832-0022-259-F08C-96vo
GenBank Accession LN498116 [GenBank]
Sequencing primer gene specific primer, 96vo: 5'-ATCGAGTTGAAGATGGAAGGTAGA-3'
Sequence (A. th genome BLAST matches underlined)
>26-K117832-0022-259-F08C-96vo
ATCGTTGGTTGGGAATAATCTTGGGATGGTTAATAGCCAGATCACTACAATAGTATCTTT
CTTGGGATTTATAGTGGGTTGGTAGTGGTAGAAAGATCAAAGTTTTGATAACATATCAAT
TTAGTGTTTTGAAACTACGATTGAAGTTTGGTCAAAGCTTGCTAATGATTTAGCTAACCA
TTAGAATTCGAACTTTTATGCATGCACTATAATCTTTCTTTGATCTTTGAATTATTTCAA
AATACAGAAACCTTTCTTCCATTAATTCCAAAAGAAAAAAAATGCCGCCGCAACTAAATT
ATATATGTACTTTGTTTGTTGTTTCTCTGGCCAAGCTTTGACCTTCCGCGAACGTGAAGT
GCTATTTGAACGGTCCACCACTGCTTCCATATCCTCTTAGGGCAACTAATTTCACCTTTT
ATATATGTGTGGGTGAATAAATTACTAGAAATGTCCAAAACATAAGATATTATTTGAAGA
TTTTTAGGACCCATACCATATTTTCCAATTTGCATGTCTAGGAGAATCCACTTGGAAAAC
AACTTAAGAAAATGACATTGCACTATGTACTTAATACCGTACTAAACTTTCAGACTTTTC
AATATTTTACTCTTTTATTCTTTTATGTTTTGAGATATTTATGAACTAACGTAGTAAGAT
ATTCAATTGTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATG
GTCAATATGGAGAANAAGAAAGAGTAATTACCAATTTTTTTTCAATTCACAAATGTAGAT
ATCCGC
   
Sequence Name 02-K117831-0022-259-F08C-8409
GenBank Accession LN487219 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>02-K117831-0022-259-F08C-8409
ATTGAATATCTTACTACGTTAGTTCATAAATATCTCAAAACATAAAAGAATAAAAGAGTA
AAATATTGAAAAGTCTGAAAGTTTAGTACGGTATTAAGTACATAGTGCAATGTCATTTTC
TTAAGTTGTTTTCCAAGTGGATTCTCCTAGACATGCAAATTGGAAAATATGGTATGGGTC
CTAAAAATCTTCAAATAATATCTTATGTTTTGGACATTTCTAGTAATTTATTCACCCACA
CATATATAAAAGGTGAAATTAGTTGCCCTAAGAGGATATGGAAGCAGTGGTGGACCGTTC
AAATAGCACTTCACGTTCGCGGAAGGTCAAAGCTTGGCCAGAGAAACAACAAACAAAGTA
CATATATAATTTAGTTGCGGCGGCATTTTTTTTCTTTTGGAATTAATGGAAGAAAGGTTT
CTGTATTTTGAAATAATTCAAAGATCAAAGAAAGATTATAGTGCATGCATAAAAGTTCGA
ATTCTAATGGTTAGCTAAATCATTAGCAAGCTTTGACCAAACTTCAATCGTAGTTTCAAA
ACACTAAATTGATATGTTATCAAAACTTTGATCTTTCTACCACTACCAACCCACTATAAA
TCCCAAGAAAGATACTATTGTAGTGATCTGGCTATTAACCATCCCAAGATTAATTCCCAA
CCAACGATCTCCTCAATTAANAGTTAAAACCCTATCTNTTATTTTCTACCTTCCACTCCA

Last Updated on 06.12.2018 16:11