Sequences from confirmation amplicon


Confirmation sequences for line 283D09 and hit At4g28520 are shown.
Line ID 283D09
Locus At4g28520 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr4:14087898
Primers used for PCR KR02 - 8474, show primer details
   
Sequence Name 25-K027639-022-283-D09C-8409
GenBank Accession LN497297 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>25-K027639-022-283-D09C-8409
AGCCATTTACATTGAATATATCCTCGAAACACCAACACATCGGAGCTGAGGGTGGTTGTG
GTCCCAGTACTCGATCTGACCGGCTTCACTCTTGATAGTTTCGGTGGCTTGGAGAACATC
TAGGTTGTCGAGGTTACACTCGTTCTGTAGCTGAGGAGGAACCCCAAGTGACTGCCTCGC
AAGGCAGCCGTTAAGGACGAGGAGAACCCCGAAGGTTGCAACGAGGAGATTGCTGAGCTT
AACCATTTTCTTTTTGTTTGTTGTGAGAGATGGATGAAGAGAACGGGACTTAGGAGGAGT
TTATATATTGTCAAGTGAGCTCGTGGTTTGAGCCACGTAGGATTAGGTTTGCATGGGGAC
TTCAGTCTAAGCTTTTTA
   
Sequence Name 26-K027639-022-283-D09C-KR02
GenBank Accession LN497771 [GenBank]
Sequencing primer gene specific primer, KR02: 5'-CTCACAGAGTGACGTGTAAAAAGC-3'
Sequence (A. th genome BLAST matches underlined)
>26-K027639-022-283-D09C-KR02
AACCTATCCTACGTGGCTCAACCACGAGCTCACTTGACAATATATAAACTCCTCCTAAGT
CCCGTTCTCTTCATCCATCTCTCACAACAAACAAAAAGAAAATGGTTAAGCTCAGCAATC
TCCTCGTTGCAACCTTCGGGGTTCTCCTCGTCCTTAACGGCTGCCTTGCGAGGCAGTCAC
TTGGGGTTCCTCCTCAGCTACAGAACGAGTGTAACCTCGACAACCTAGATGTTCTCCAAG
CCACCGAAACTATCAAGAGTGAAGCCGGTCAGATCGAGTACTGGGACCACAACCACCCTC
AGCTCCGATGTGTTGGTGTTTCAGGATATATTCAATTGTAAATGGCTTCATGTCCGGGAA
ATCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTAC
CAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACA
TTTTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATT
ATTCTAATTCGGAAATCTTTATTTCGACGTGTCTAC
Primers used for PCR 10au - 3144, show primer details
   
Sequence Name 01-K106829-0022-283-D09C-3144
GenBank Accession LN486592 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>01-K106829-0022-283-D09C-3144
CACTATCCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACAG
GGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTGAATAT
ATCGAGGTTCATACATGATAATTACCCTTCCAATAAAATTAATGTATATATCATGTCTAA
TTAATGAAGATATAATCGATTCACCATATGATAACTCTTTTTTTTCCTCTCTACCTAAAA
TTAATTTACAGGAACGGGTATCAGCGGAAGAGTGGTCCCTGGATGTGCCGAGACCTTCAT
GGACTCGCAGCCGATGCAAGGACAACAACAAGGCCAACCATGGCAAGGACGACAGGGACA
ACAAGGCCAACCATGGGAAGGACAGGGACAACAGGGACAACAAGGAAGACAAGGCCAACC
ATGGGAAGGACAGGGACAACAGGGACAACAAGGACGACAGGGACAACAAGGCCAACCATG
GGAAGGACAGGGACAGCAGGGACAACAAGGGTTCCGTGACATGCACCAGAAGGTGGAACA
TGTGAGACGCGGAGACGTCTTTGCCAACACTCCAGGCTCTGCCCACTGGATCTACAACTA
CAGAAGAACAG
   
Sequence Name 06-K106830-0022-283-D09C-10au
GenBank Accession LN488832 [GenBank]
Sequencing primer gene specific primer, 10au: 5'-GCTGTTCTCCTGAGTTGTAGATCC-3'
Sequence (A. th genome BLAST matches underlined)
>06-K106830-0022-283-D09C-10au
TCTCCGCGTCTCACATGTTCCACCTTCTGGTGCATGTCACGGAACCCTTGTTGTCCCTGC
TGTCCCTGTCCTTCCCATGGTTGGCCTTGTTGTCCCTGTCGTCCTTGTTGTCCCTGTTGT
CCCTGTCCTTCCCATGGTTGGCCTTGTCTTCCTTGTTGTCCCTGTTGTCCCTGTCCTTCC
CATGGTTGGCCTTGTTGTCCCTGTCGTCCTTGCCATGGTTGGCCTTGTTGTTGTCCTTGC
ATCGGCTGCGAGTCCATGAAGGTCTCGGCACATCCAGGGACCACTCTTCCGCTGATACCC
GTTCCTGTAAATTAATTTTAGGTAGAGAGGAAAAAAAAGAGTTATCATATGGTGAATCGA
TTATATCTTCATTAATTAGACATGATATATACATTAATTTTATTGGAAGGGTAATTATCA
TGTATGAACCTCGATATATTCAACACTGATAGTTTAAACCGAAGGCGGGAAACGACAATC
TGATCCCCGGGTACCCTGTCCTCTCCAAATGAAATGAACTTCCTTATATAGAGGAAGGGT
CTTGCGAAGGATAGTGGGATTGTGCGTCATCCCTTACATCAGTGAAGATATCACATCAAT
CCA

Last Updated on 06.12.2018 16:11