Sequences from confirmation amplicon


Confirmation sequences for line 383G09 and hit At2g05171 are shown.
Line ID 383G09
Locus At2g05171 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr2:1874836
Primers used for PCR ZZ59 - 8474, show primer details
   
Sequence Name 17-K021643-022-383-G09C-8409
GenBank Accession LN493679 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>17-K021643-022-383-G09C-8409
AGCCATTTACTGTATATTATTGTAGGTTATGGTTTTATACTCATCATTGAATCTAAAAAC
CAAGGGAGAATCTCTTTTGTGCGAGTAGACAGATACTAAAGTTAAGATACTTGAACCGTT
TCAGGAATTTGTATTCGTCGTCATCAGGGAGGTACAATAAGTTCGTCTTGTCAGATTCGC
AGGGCTGAATCTCTGTGGGCTACTACTTCTAATCTCTGTAGTGCTTCCAGTTTCCCTGAG
GATGTTAACCGAATCAAAGTAAACCCGGAAGATTGATCTGATGACCCTAGTGGAAGGTAC
TAGTTTTTAAACGCCAAAACCAAAACCAAAACGAAAACCAAGAACAAGGAAGGACTCTCC
TTTTCTACCAATCGATCCACTCGGGAAGAGGCTCCTTGATCCTCACTTCAATCTCCGCAG
AGACGGTTTCCAACCGATAAAAGTAGATTGTATGTAAGCTCACATACATATATAGTAGAA
GTATCCTTCACAACAGAAGGAGAAGGTCTATAATAGAACATTTAAGATTGAGCATTCCGA
AACAACCCAACTATAACACAGGACGTAGTTGATTCATCTGTCAAA
   
Sequence Name 18-K021643-022-383-G09C-ZZ59
GenBank Accession LN494127 [GenBank]
Sequencing primer gene specific primer, ZZ59: 5'-TCAGGTTTAGGACAGATGAATCAA-3'
Sequence (A. th genome BLAST matches underlined)
>18-K021643-022-383-G09C-ZZ59
TGGGTTGTTTCGGAATGCTCAATCTTAAATGTTCTATTATAGACCTTCTCCTTCTGTTGT
GAAGGATACTTCTACTATATATGTATGTGAGCTTACATACAATCTACTTTTATCGGTTGG
AAACCGTCTCTGCGGAGATTGAAGTGAGGATCAAGGAGCCTCTTCCCGAGTGGATCGATT
GGTAGAAAAGGAGAGTCCTTCCTTGTTCTTGGTTTTCGTTTTGGTTTTGGTTTTGGCGTT
TAAAAACTAGTACCTTCCACTAGGGTCATCAGATCAATCTTCCGGGTTTACTTTGATTCG
GTTAACATCCTCAGGGAAACTGGAAGCACTACAGAGATTAGAAGTAGTAGCCCACAGAGA
TTCAGCCCTGCGAATCTGACAAGACGAACTTATTGTACCTCCCTGATGACGACGAATACA
AATTCCTGAAACGGTTCAAGTATCTTAACTTTAGTATCTGTCTACTCGCACAAAAGAGAT
TCTCCCTTGGTTTTTAGATTCAATGATGAGTATAAAACCATAACCTACAATAATATACAT
GTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATAT
GGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAG
CGTTATTATAAAATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCGTATTTA
TAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATNTCGACGTGTCT
Primers used for PCR ZZ60 - 8474, show primer details
   
Sequence Name 35-K021644-022-383-G09C-8409
GenBank Accession LN501657 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>35-K021644-022-383-G09C-8409
TTTCCTTTGCTTGATCTGCCAGAGGAGTTATACGAAAATTGAACAAGGTTTGGTAGAGAC
GGATCTTCATCTACCATAACCGCAGTCTTCGACAATATCAGTAGAGCTTATTTGCTTGCT
TTCTCCAACTACTCTTGAGTTTTAAGATGCTTTGTTACCTCCAAGACGCTTCTATCTCAG
TGGAAAGATCAGTCTTGTTCCTTTCTCAGAATCGCTGTAAACAGGTTTTGTCTTGACACT
TTACTTTCTTCACTCTTATTTGACTCTAATGTCACATTACCTACACTGTGAGTCACCTTA
GCAGGATTTGAACTCTGAATACTTAAGTTCATGATATTATCAATCTAATCAAGACTCACG
AGTGTCATCTTTGACCTCAGTTAATAATATTAAGAAAACAAGATTCTAGCTGTCCACTAT
TTCACGTTCTTCCAGAGAGAAAACGCTTTTTAAAGATTAATAATAAAGCATGATAAGTCA
TAGACTATGACTCATAGTTTATATTAACTGATTCTTGATTATGTTTCAGCTCCCTCTTCA
CTTTAAGCAACAATGGCAGCAATTCTCAGCGTTGACTTTCAGAACTGTTTCATC
   
Sequence Name 36-K021644-022-383-G09C-ZZ60
GenBank Accession LN502055 [GenBank]
Sequencing primer gene specific primer, ZZ60: 5'-CATAGGACGATGAAGATGAAACAG-3'
Sequence (A. th genome BLAST matches underlined)
>36-K021644-022-383-G09C-ZZ60
CTGCCTTGTTGCTTAAGTGAAGAGGGAGCTGAAACATAATCAAGAATCAGTTAATATAAA
CTATGAGTCATAGTCTATGACTTATCATGCTTTATTATTAATCTTTAAAAAGCGTTTTCT
CTCTGGAAGAACGTGAAATAGTGGACAGCTAGAATCTTGTTTTCTTAATATTATTAACTG
AGGTCAAAGATGACACTCGTGAGTCTTGATTAGATTGATAATATCATGAACTTAAGTATT
CAGAGTTCAAATCCTGCTAAGGTGACTCACAGTGTAGGTAATGTGACATTAGAGTCAAAT
AAGAGTGAAGAAAGTAAAGTGTCAAGACAAAACCTGTTTACAGCGATTCTGAGAAAGGAA
CAAGACTGATCTTTCCACTGAGATAGAAGCGTCTTGGAGGTAACAAAGCATCTTAAAACT
CAAGAGTAGTTGGAGAAAGCAAGCAAATAAGCTCTACTGATATTGTCGAAGACTGCGGTT
ATGGTAGATGAAGATCCGTCTCTACCAAACCTTGTTCAATTTTCGTATAACTCCTCTTGG
CAGATCAAGCTAAAGGAAATACTCATATATTACATGGATCAGCAATGAGTATGATGGTCA
ATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCC
GCAGCGTTATTATAAAATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCGTA
TTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATNTCGACGTGTC
TA

Last Updated on 06.12.2018 16:11