Sequences from confirmation amplicon


Confirmation sequences for line 432C09 and hit At3g50750 are shown.
Line ID 432C09
Locus At3g50750 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:18862139
Primers used for PCR AY51 - 8474, show primer details
   
Sequence Name 27-K025392-022-432-C09C-8409
GenBank Accession LN498222 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>27-K025392-022-432-C09C-8409
GTAGATTTCCCGGACATGAAGCCATTTACAATTGAAGTAATTATATCAGCTCCAAGTCAT
CGATACCAACATCGTGAATCTTCTCACCTTCCCACGGCTTCACCGACACATCTACTCCGA
CGGAGCTAACGCTTTTTCCGACCAGGTTAAATGTCGGCGACGGAGGACATGTCTGAGAAA
CGTTAACCGATTGGAAATTTCCCCATCGACAAGAATCAACCGTCGAAACATCCGATTCAT
CGCATTCTGGAATCGATGTGTAGTGATGGAGACGCCGTGTTGGGCTTGACGGAGCTGAGA
CTGGGAAATTACTGCTTTGCCATCTCGGAAGTCTCGGATTTGATCTTCTAGGTGAAGAAA
TCGGCGGTGTAACAGGGGCACTATTGGAAATTCGTAGAGGAGCGAGGTTTCCAGACGAAG
CTAGGTTTTGGAGATAGGGAATGAGATAAGTCGAGGATTGATTCGGGTCAAACCGGGTCG
GACTTGGGTAAGATGACGATGAAGGGCTAGCTTGATACGAAGGAATTGGGCTTTGAAAGG
CCGATGATTGTGGACTAAGTTGGATTGACGAACACGGCACTGTTGTTTCTGTTGGTCGAG
AACCCTGACGGAAAAAAAAGTCAATTCAATGTCTGAAAATTGTTTAAAAAGAATCAAAAT
TTGGATGAATCTGAAGTTAAAGTTGAAACCTTTCGATAAGTGGTGCCATCTTCATGAACG
ATCCAACCA
   
Sequence Name 28-K025392-022-432-C09C-AY51
GenBank Accession LN498689 [GenBank]
Sequencing primer gene specific primer, AY51: 5'-AAGTCCTCAAAGCTCTTTGTCTTG-3'
Sequence (A. th genome BLAST matches underlined)
>28-K025392-022-432-C09C-AY51
CTGGTTGGATCGTTCATGAAGATGGCACCACTTATCGAAAGGTTTCAACTTTAACTTCAG
ATTCATCCAAATTTTGATTCTTTTTAAACAATTTTCAGACATTGAATTGACTTTTTTTTC
CGTCAGGGTTCTCGACCAACAGAAACAACAGTGCCGTGTTCGTCAATCCAACTTAGTCCA
CAATCATCGGCCTTTCAAAGCCCAATTCCTTCGTATCAAGCTAGCCCTTCATCGTCATCT
TACCCAAGTCCGACCCGGTTTGACCCGAATCAATCCTCGACTTATCTCATTCCCTATCTC
CAAAACCTAGCTTCGTCTGGAAACCTCGCTCCTCTACGAATTTCCAATAGTGCCCCTGTT
ACACCGCCGATTTCTTCACCTAGAAGATCAAATCCGAGACTTCCGAGATGGCAAAGCAGT
AATTTCCCAGTCTCAGCTCCGTCAAGCCCAACACGGCGTCTCCATCACTACACATCGATT
CCAGAATGCGATGAATCGGATGTTTCGACGGTTGATTCTTGTCGATGGGGAAATTTCCAA
TCGGTTAACGTTTCTCAGACATGTCCTCCGTCGCCGACATTTAACCTGGTCGGAAAAAGC
GTTAGCTCCGTCGGAGTAGATGTGTCGGTGAAGCCGTGGGAAGGTGAGAAGATTCACGAT
GTTGGTATCGATGACTTGGAGCTGATATAATTACTTCAATTGTAAATGGCTTCATGTCCG
GGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAAGAAAGAGTA
TTACCAATTTTT
Primers used for PCR 11bd - 8474, show primer details
   
Sequence Name 45-K118893-0022-432-C09C-11bd
GenBank Accession LN505698 [GenBank]
Sequencing primer gene specific primer, 11bd: 5'-GGGAGTGGTTACTCTCACTTTCAC-3'
Sequence (A. th genome BLAST matches underlined)
>45-K118893-0022-432-C09C-11bd
AAAAATCTAAATTTTGTGAAATGAAGCATTGATAAATGATAATGACTGTACAAAATAGTC
ATGAAAACAAAAACCAATCTTTTAGCTACAATTTAACCGGAACCAATCTCGTACCGGACC
CGACTAAATAGTTAAACCACGACAATTACCAATGAGTATTTCATTGATACCAACATCCAA
TTGAAAATGGCTTCATGTCCGGGAAATCTACTTGGATCACCAATGAGTATGATGGTCAAT
ATGGAAAAAAAAAAAGAGTAATTCCCAATTTTTTTTCAATTCAAAAATGTAAATTTCCGC
AAAGTTTTAAAAAA
   
Sequence Name 05-K118892-0022-432-C09C-8409
GenBank Accession LN488572 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>05-K118892-0022-432-C09C-8409
CATTTTCATTGGATGTTGGTATCAATGATATACTCATTGGTAATTGTCGTGGTTTAACTA
TTTAGTCGGGTCCGGTACGAGATTGGTTCCGGTTAAATCGTAGCTAATAGATTGGTCTTT
GTCTTCATGACTATTTTGTACAGTCATTATCATTTATCAATGCTTCATTTCACAAAATCT
AGTATTTTTTTTTTTATATGTAAGGGGGGATAATGAAAAATGCAAGTGTGTGAAAGTGAA
ATTAACCCCCCCA
Primers used for PCR 50wp - 8474, show primer details
   
Sequence Name 46-K118893-0022-432-C09C-50wp
GenBank Accession LN506021 [GenBank]
Sequencing primer gene specific primer, 50wp: 5'-AAAACCAGTCAACCAAAACGTAAC-3'
Sequence (A. th genome BLAST matches underlined)
>46-K118893-0022-432-C09C-50wp
GCTAAATAAAATCAGTATTTATGACTGAAAAATAAATAAAATGTGAAAATTAGATTTAAG
CCCGAATCAACAACTAAAAAGGACGATGCATCATACACAAACAATCTACGAAAAAACAAA
AAGGTTAATGATACTGCCTTTTACAAATATATCAGTCTCATTCAAACTTTTATAAATTTC
CTTTTAAACGTGTATAAGGACAGAAGTCTCAAACCACATGAACCAACCAACTTGTCATGT
TTATAGCAAAACAGAATTGTCCAACAATAAGATCAAGTCACGCAACGATAGATTCATATA
GTTTTTTTGTGTGTTTCTCATTCAATTTCTCAAAAGATAATATCAAAATTACAGGTCCAC
TAAAAATGGTGTGTTTATATAGATAGGCACATTGAAAAATCATGCGTGGTTAGAGATCAC
ATTCACATGACCCCATCATCACATGGGGAGTGGTTACTCTCACTTTCACACACTTGCATT
TTTCATTATCCACCATTACATATAAAAAAAAAAATACTAAATTTTGTGAAATGAAGCATT
GATAAATGATAATGACTGTACAAAATAGTCTTGAAAACAAAAACCAATCTTTTACCTACA
ATTTAACCGGAACCAATCTCGTACCGAACCCGACTAATTAGTTAAACCACGACAATTACC
AATGAGTATATCATTGATACCAACATCCAATTGAAAATGGCTTCATGTCCGGGAAATCTA
CTTGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAA
   
Sequence Name 06-K118892-0022-432-C09C-oriL
GenBank Accession LN489025 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>06-K118892-0022-432-C09C-oriL
ATTTTCATTGGATGTTGGTATCAATGATATACTCATTGGTAATTGTCGTGGTTTAACTAT
TTAGTCGGGTCCGGTACGAGATTGGTTCCGGTTAAATCGTAGCTAATAGATTGGTCTTTG
TCTTCATGACTATTTTGTACAGTCATTATCATTTATCAATGCTTCATTTCACAAAATCTA
GTATTTTTTTTTTTATATGTAAGGGGGGATAATGAAAAATGCAAGTGTGTGAAAGTGAAA
GTAACCACTCCCCATGTGATGATGGGGTCATGTAAATGTGATCTCTAACCACGCAGGATT
TTTCAATGTGCCTATCTTTATAAACACACCATTTTTAGGGGACCTGTAATTTTGATATTA
TCTTTTGAGAAATTGAATGAAAAACCCACAAAAAAACTATTTGAATCTTTCGTTGCGTGA
CTTGATCTTATTGTTGGACAATTCTGTTTTGCTATAAACATGACAAGTTGGTTGGTTCAT
GTGGTTTGAAACTTCTGTCCTTATACACTTTTAAAAGGAAATTTATAAAATTTTGAATGA
AACTGATATATTTGTAAAAGGCAGTATCATTAACCTTTTTGTTTTTTCGAAAATTGTTTG
TGTATGATGCACCGCCCTTTTTAGTTGTTGATTCGGGCTTAAATCTAATTTTCACATTTT
ATTTATTTTTCAGTCATAAATACGGATTTTATTTTAGCTTTTTCATAGGTTTACAAAAAT
TTAATTTTTAGTTTGGGTTTGTTACGTTTT

Last Updated on 06.12.2018 16:11