Sequences from confirmation amplicon


Confirmation sequences for line 452G01 and hit At3g55610 are shown.
Line ID 452G01
Locus At3g55610 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:20624930
Primers used for PCR NS08 - 8474, show primer details
   
Sequence Name 26-K019980-022-452-G01C-NS08
GenBank Accession LN497718 [GenBank]
Sequencing primer gene specific primer, NS08: 5'-TTCCAATCTGGATTTCCTTACAAC-3'
Sequence (A. th genome BLAST matches underlined)
>26-K019980-022-452-G01C-NS08
GTTTTATATTTAATACTAAACTAGAGTATTTCAAACCATAAACACTGAAATTAAGATAGT
GTTTTGTTTGTTGACCGTTTTCAAAGAGACTTGTCTGAAGTGTACGTGTCAAATTGCAGG
CGTCACTTTGTATGGTGGGCCAAGAGCAAGTGCAAAACTGAATATTCCGGAAACAAAATC
ATTTCACCACGAGTACAGTTCCAAGGCCTGCACCGTTGAAATTGTAGAAGACGTATATGG
TGCTATAGATCATATTCACCAACATGGAAGGTAAAATTACTGCTGATTTCAAATTTTTCA
AAGGACCTACCGCTCTGTATTCCATGCATGTGCTGAAAGTGTGGTCACTCCTGTATATAT
TCAATTGTAAATGGCTTCATGTCCGGGAAATCTACATGGATCAGCAATGAGTATGATGGT
CAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGT
CCGCAGCGTTATTATAAAATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCG
TATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTG
TCTACATT
   
Sequence Name 30-K019980-022-452-G01C-8409
GenBank Accession LN499533 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>30-K019980-022-452-G01C-8409
ATTTCCCGGACATGAAGCCATTTACAATTGAATATATACAGGAGTGACCACACTTTCAGC
ACATGCATGGAATACAGAGCGGTAGGTCCTTTGAAAAATTTGAAATCAGCAGTAATTTTA
CCTTCCATGTTGGTGAATATGATCTATAGCACCATATACGTCTTCTACAATTTCAACGGT
GCAGGCCTTGGAACTGTACTCGTGGTGAAATGATTTTGTTTCCGGAATATTCAGTTTTGC
ACTTGCTCTTGGCCCACCATACAAAGTGACGCCTGCAATTTGACACGTACACTTCAGACA
AGTCTCTTTGAAAACGGTCAACAAACAAAACACTATCTTAATTTCAGTGTTTATGGTTTG
AAATACTCTAGTTTAGTATTAAATATAAAACAACAGTTGTAAGGAAATCCA
Primers used for PCR NS07 - 8474, show primer details
   
Sequence Name 11-K019984-022-452-G01C-NS07
GenBank Accession LN490911 [GenBank]
Sequencing primer gene specific primer, NS07: 5'-ATGATGGTACAAACCTCAAGGAAC-3'
Sequence (A. th genome BLAST matches underlined)
>11-K019984-022-452-G01C-NS07
TATCCTATGTAAAAGGGGGAAAAAACTTCAATCATAATTGTAAAACATAATATGACATCA
GCAGAGAAAGAGAGAACTAAATTCCATTCTCAACAGCCTCTGTCCTTTGTAAGACAGGAA
GATCCTTATGGGTGTAAACGATTCCATTGTCTCCATCCACAACTTGTCCCTTTCCTCTCA
TTATCCTGTCATTCATCACCACAACCATTTAAACTTCACAGCTTTTGACAAATCAGTGAA
CTATGGAAGAGAGAGAAACAAAATAACTCAATTGTAGTACCATCTTGTTGTCAATAATCC
TTCAACTCCAACTGGACCACGGGCATGAATCCTGCTTGTGCTTATTCCCACCTATACATA
AGAACAAATCACATTGGCCATTTATTCATTGACACTTCTCCATTTGTTTGGTTTATATAT
GTGATATTATTGGTAACTCTCTCTCTTCCCTACCTCAGCACCAAGTCCGAACCTAAAACC
ATCAGAGAATCTTGTGCTTGCATTGTGGAAAACAGCAGCACTGTCGAGAACACGCAAATA
TTAGAAGAATTAGTTTTCCCATATATCCAACTACAAACATTCTATGGACTGGAAAATCAA
CAGCAGAAAATGTTTTAGTATATATGGTTATTACCTGTCCACTTGGCGGAGGAATATTTC
TGCTACTTCACTATCTTCCGTCACTATGCAATCAGTGTGTGCACTGCTCTCATAAGATAA
GACAAAGGATAATCTACA
   
Sequence Name 12-K019984-022-452-G01C-8409
GenBank Accession LN491370 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>12-K019984-022-452-G01C-8409
CATGTAGATTTCCCGGACATGAAGCCATTTACATGTAGATTATCCTTTGTCTTATCTTAT
GAGAGCAGTGCACACACTGATTGCATAGTGACGGAAGATAGTGAAGTAGCAGAAATATTC
CTCCGCCAAGTGGACAGGTAATAACCATATATACTAAAACATTTTCTGCTGTTGATTTTC
CAGTCCATAGAATGTTTGTAGTTGGATATATGGGAAAACTAATTCTTCTAATATTTGCGT
GTTCTCGACAGTGCTGCTGTTTTCCACAATGCAAGCACAAGATTCTCTGATGGTTTTAGG
TTCGGACTTGGTGCTGAGGTAGGGAAGAGAGAGAGTTACCAATAATATCACATATATAAA
CCAAACAAATGGAGAAGTGTCAATGAATAAATGGCCAATGTGATTTGTTCTTATGTATAG
GTGGGAATAAGCACAAGCAGGATTCATGCCCGTGGTCCAGTTGGAGTTGAAGGATTATTG
ACAACAAGATGGTACTACAATTGAGTTATTTTGTTTCTCTCTCTTCCATAGTTCACTGAT
TTGTCAAAAGCTGTGAAGTTTAAATGGTTGTGGTGATGAATGACAGGATAATGAGAGGAA
AGGGACAAGTTGTGGATGGAGACAATGGAATCGTTTACACCCATAAGGATCTTCCTGTCT
TACAAAGGACAGAGGCTGTTGAGAATGGAATTTAGTTCTCTCTTTCTCTGCTGATGTCAT
ATTATGTTTTACAATTATGATTGAAGTTTTTTCCCCCTTTTACA

Last Updated on 06.12.2018 16:11