Sequences from confirmation amplicon


Confirmation sequences for line 527D12 and hit At5g55120 are shown.
Line ID 527D12
Locus At5g55120 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:22369822
Primers used for PCR KF03 - 8474, show primer details
   
Sequence Name 09-K103100-0022-527-D12C-KF03
GenBank Accession LN490132 [GenBank]
Sequencing primer gene specific primer, KF03: 5'-TAGCTTAGGCAAACATCAACAATG-3'
Sequence (A. th genome BLAST matches underlined)
>09-K103100-0022-527-D12C-KF03
GATTCTGAAGCTCCAAGTAAACATCAAGTCATCAACAATGTGAGCTGAAACTTGATGCTT
CAGGTCAAGTAAACATCAAACACATTTGGCTCTAAAAGTAAATCAATTAACCAAAAATCA
AAGAGACAATAATACCTTGGTTTCGCAGGCGGTGACATCATAGCGAAAAAGACCTCTTTG
GAAACGATCTTCCCACTAGAAAACATAAGGCATTTGATACATTACTCAAACAATTAACGA
ATTGGTTAACGATATGCATTTGATATATTCAATTGTAAATGGCTTCATGTCCGGGAAATC
TACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAA
TTTTTTTTCAATTCAAAAATGTAGATGTCCGCACAATTATT
   
Sequence Name 09-K103101-0022-527-D12C-8409
GenBank Accession LN490133 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>09-K103101-0022-527-D12C-8409
ATTTACATTGAATATATCAAATGCATATCGTTAACCAATTCGTTAATTGTTTGAGTAATG
TATCAAATGCCTTATGTTTTCTAGTGGGAAGATCGTTTCCAAAGAGGTCTTTTTCGCTAT
GATGTCACCGCCTGCGAAACCAAGGTATTATTGTCTCTTTGATTTTTGGTTAATTGATTT
ACTTTTAGAGCCAAATGTGTTTGATGTTTACTTGACCTGAAGCATCAAGTTTCAGCTCAC
ATTGTTGATGACTTGATGTTTACTTGGAGCTTAAGAATCATGTTTTAGTTTCACATTGTT
GATGTTTACTTGAGCTGAAGAATCAAGTTTCAGTTTCACATTGTTGATGTTTGCCTAAGC
TAAAGCATCTAGTTTTAGTTTCACATTTACTTGAGCTGAAGAATCAAGTTTCTGTTTCAC
ATTGTTGATGTTTGCCTAAGCTAA
Primers used for PCR AR09 - 3144, show primer details
   
Sequence Name 02-K106400-0022-527-D12C-3144
GenBank Accession LN487045 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>02-K106400-0022-527-D12C-CR3S
CCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACC
CGGGGATCAGATTGTCGTTTCCAACTGTTGTATCCAAAACCACTACCTCTCCAATAACTA
AGGATTCGAGGAACGTCACCGGAGATTCTGTGTTCTCTCCGACGGATTTATCAAGATTCT
TGCAGGTATATAAAGGAAGTCTTGCCCCTGAAAACACAAACAAAATGTCAGCAAAATTCA
AATTCAAACAAAAAGAAGAACTTTGCCAGCTCTATAAAATGTACCATTGATGCAACACTT
GCTCAGACAATTCCGACCACATCCACCTTCTTCAACTGTCTCATCTTTTTGATAATTCGA
TACAACTGTTGGAACTCTTTTGATCTTCAACAACATTGCTCACAAATATTATAATCTCGA
AATAACAGATTAATACAGGACTCTAAGAACTAAAAACCTAATTAGAAAAAGGGTTAGGGT
TAGTGGCTATTTGTGGAACCGCCTCCGGCGAGGAAGAGGAGATCGGAGGGACTGCCGCCT
TCAGACGGCAGAGCTCCACGTCCTCCGTGAGGCAAAGGATTAGTTATGATTAAACAACCC
TTTCGTTGGACATGAAAGCTCAAAGGCCGTGGCTTTATCCCGTA
   
Sequence Name 17-K106401-0022-527-D12C-AR09
GenBank Accession LN493864 [GenBank]
Sequencing primer gene specific primer, AR09: 5'-GTAATCACGGCTATTTACGGGATA-3'
Sequence (A. th genome BLAST matches underlined)
>17-K106401-0022-527-D12C-AR09
GGGTTGTTTATCTAACTAATCCTTTGCCTCACGGAGGACCTGTAGCTCTGCCGTCTGAAG
GCGGCAGTCCCTCCGATCTCCTCTTCCTCGCCGGAGGCGGTTCCACAAATAGCCACTAAC
CCTAACCCTTTTTCTAATTAGGTTTTTAGTTCTTAGAGTCCTGTATTAATCTGTTATTTC
GAGATTATAATATTTGTGAGCAATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTATC
GAATTATCAAAAAGATGAGACAGTTGAAGAAGGTGGATGTGGTCGGAATTGTCTGAGCAA
GTGTTGCATCAATGGTACATTTTATAGAGCTGGCAAAGTTCTTCTTTTTGTTTGAATTTG
AATTTTGCTGACATTTTGTTTGTGTTTTCAGGGGCAAGACTTCCTTTATATACCTGCAAG
AATCTTGATAAATCCGTCGGAGAGAACACAGAATCTCCGGTGACGTTCCTCGAATCCTTA
GTTATTGGAGAGGTAGTGGTTTTGGATACAACAGTTGGAAACGACAATCTGATCCCCGGG
TACCCTGTCCTCTCCAAATGAAATGAACTTCCTTATATAGAGGAAGGGTCTTGCGAAGGA
TAGTGGGATTGTGCGTCATCCCTTACGTCAGTGGAGATATCACATCAATCCA

Last Updated on 06.12.2018 16:11