Sequences from confirmation amplicon


Confirmation sequences for line 556E08 and hit At1g06680 are shown.
Line ID 556E08
Locus At1g06680 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:2048987
Primers used for PCR JV17 - 8474, show primer details
   
Sequence Name 78-K033215-022-556-E08C-JV17
GenBank Accession LN513631 [GenBank]
Sequencing primer gene specific primer, JV17: 5'-CCTTTGGCATATGCTTCAATAGAT-3'
Sequence (A. th genome BLAST matches underlined)
>78-K033215-022-556-E08C-JV17
TTATCTGCGTTTTACCTTTCTGTTGACTAGAAGAACCATTTGATGCTTACCTCTTTTCAT
ATCAGCTTCAAGCAGGCTTTCTTCTCACTATCTTTGTGCTTTCAAGGATTTAGATTTAGT
CTATAGCTTCTTTCTGAGTCAATATCTTATTAATTTGAGAAAATATCTATTGAATATAGT
TGTTTTTTAAGAAAACTTGGAAAACGAGTCTGTTATCATAGGTACACAAGTGATGCCGAA
AAGGTAACATCATCTTGATAGTTCTCAAAAGCTCAGTTTCATTTTCCATTTTTTACAAGA
GACAAATGAAGAAAGCAAGCAGAGCATTGTTACGTTGTGTTGCTTTCACTCAAGCAACAC
TGAAAGAAGTGGCTGCGCTCTCGACAAATTTCCTGGCTCCCTTGAACCACCTCTTGTCTC
CAGCTTGTGCTTTGCAGATGTAAAGCTTCCCTCCATTCACGGTTGCTGTGATCAGCTGAT
GCTTCCCACCTTCGTCTCATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCTACATG
GATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTT
TTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGATAA
AACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATT
CGGAAATCTTTATTTCGACGTGTCTACATTCAC
   
Sequence Name 70-K033215-022-556-E08C-8409
GenBank Accession LN512316 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>70-K033215-022-556-E08C-8409
TTACAATTGAATATGAGACGAAGGTGGGAAGCATCAGCTGATCACAGCAACCGTGAATGG
AGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGACAAGAGGTGGTTCAAGGGAGCCAG
GAAATTTGTCGAGAGCGCAGCCACTTCTTTCAGTGTTGCTTGAGTGAAAGCAACACAACG
TAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTTGTAAAAAATGGAAAATGAAACTGA
GCTTTTGAGAACTATCAAGATGATGTTACCTTTTCGGCATCACTTGTGTACCTATGATAA
CAGACTCGTTTTCCAAGTTTTCTTAAAAAACAACTATATTCAATAGATATTTTCTCAAAT
TAATAAGATATTGACTCAGAAAGAAGCTATAGACTAAATCTAAATCCTTGAAAGCACAAA
GATAGTGAGAAGAAAGCCTGCTTGAAGCTGATATGAAAAGAGGTAAGCATCAAATGGTTC
TTCTAGTCAACAGAAAGGTTAAAACGCAGATGAATTTTGACGTCTGACTCTAACTAGATC
TATTGAAGCATAGGGCCAAA
Primers used for PCR JV18 - 8474, show primer details
   
Sequence Name 79-K033215-022-556-E08C-JV18
GenBank Accession LN513769 [GenBank]
Sequencing primer gene specific primer, JV18: 5'-GCAAAGAGATTGAGTATCCAGGAC-3'
Sequence (A. th genome BLAST matches underlined)
>79-K033215-022-556-E08C-JV18
TGCTCTAGCAATCTCAATGTCATGGTCACTCCTACCGACAAGAAGTCCATCACTGATTAC
GGTTCTCCCGAAGAGTTCCTCTCTCAGGTCTTTGCTTTACTCCATCATCTGTAAAGGTAT
TGATGTTACAAAATCTAATGAAGTGTGAGACTGAGTGGTGATTTGGGCTTTATGCAGGTT
AATTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGTAAACTTCCCA
TTGTTATTTGTTATAAGTAAACCAGAAGCTGATAGAATAGAATAAGAGAATCAAACACTA
AAGAGAGAACACATTGTCTCCCTCGTTGTTAACTGATAAAACAAAACTCAAAAGCTTTTT
TAACTGATAACCTTCAAAGACCTCTCTAGTAGTCGATGATTATTACAAGAAAGATTCTTA
CCTTAGGTGGAGTGAGTTATCAAGTTCTAACTCTGTGTGTGTGTGAATCTGATGTTCTTA
CAGGGAGGCTTTGACAACAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAG
GAAGTTGGTGGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAA
GAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTAT
AAAATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAG
CATAAACAAATTATTCTATTCGGAATCTTTATTTCGACGTGTCTACATTC
   
Sequence Name 71-K033215-022-556-E08C-oriL
GenBank Accession LN512496 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>71-K033215-022-556-E08C-oriL
CACTTCCTGAGATGATGACTCCGAATGTTTGCTGTTGCCACTGCATTGTTGTCAAAGCCT
CCCTGTAAGAACATCAGATTCACACACACACAGAGTTAGAACTTGATAACTCACTCCACC
TAAGGTAAGAATCTTTCTTGTAATAATCATCGACTACTAGAGAGGTCTTTGAAGGTTATC
AGTTAAAAAAGCTTTTGAGTTTTGTTTTATCAGTTAACAACGAGGGAGACAATGTGTTCT
CTCTTTAGTGTTTGATTCTCTTATTCTATTCTATCAGCTTCTGGTTTACTTATAACAAAT
AACAATGGGAAGTTTACCTCAGAGGCAGTCTCACCGAAGTAAGCTTGTTTCCCTAGGAGG
TAATTAACCTGCATAAAGCCCAAATCACCACTCAGTCTCACACTTCATTAGATTTTGTAA
CATCAATACCTTTACAGATGATGGAGTAAAGCAAAGACCTGAGAGAGGAACTCTTCGGGA
GAACCGTAATCAGTGATGGACTTCTTGTCGGTAGGAGTGACCATGACATTGAGATTGCTA
GTAGCATCGAAGTTGTCTTCGAACCTAAGGACTTGTCCTGGATACTCAATCTCTTTG

Last Updated on 06.12.2018 16:11