Sequences from confirmation amplicon


Confirmation sequences for line 817G01 and hit At5g39410 are shown.
Line ID 817G01
Locus At5g39410 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:15770380
Primers used for PCR KU04 - 8474, show primer details
   
Sequence Name 79-K102435-0022-817-G01C-8409
GenBank Accession LN513809 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>79-K102435-0022-817-G01C-8409
ATCTTCGAATATCTATCTCTTCGTCGTCGAACCCAAAAAGATTCTCCGTCTTAGATTCCG
ATCACGATGAACCCAACCCAAAAACCCGAACCGGTTTACGATATGGTCATACTCGGAGCA
TCCGGATTTACCGGTAAGTACGTCGTCAGAGAAGCTCTCAAGTTCCTTCAAACACCGTCT
TCTTCTCCGTTAAAGTCTCTAGCTTTAGCGGGTCGTAACCCGACCCGTTTAACCCAATCT
CTCGAATGGGCCGCCCGCCCGAACCCACCACCTTCCTCTGTCGCTATCCTCACTGCTGAT
ACATCTGACCCTGATTCACTTCGTCGTCTCTGTACTCAAACCAAACTCATCCTCAATTGT
GTTGGACCGTTTCGTATCCATGGTGATCCTGTCGTCTCTGCTTGTGCTGATTCAGGGTAA
AGTGTGAATCTTTTC
   
Sequence Name 79-K102436-0022-817-G01C-KU04
GenBank Accession LN513810 [GenBank]
Sequencing primer gene specific primer, KU04: 5'-GGAAAAGATTCACACTTTACCCTG-3'
Sequence (A. th genome BLAST matches underlined)
>79-K102436-0022-817-G01C-KU04
GATCCCATGGATCGAAACGGTCCAACACAATTGAGGATGAGTTTGGTTTGAGTACAGAGA
CGACGAAGTGAATCAGGGTCAGATGTATCAGCAGTGAGGATAGCGACAGAGGAAGGTGGT
GGGTTCGGGCGGGCGGCCCATTCGAGAGATTGGGTTAAACGGGTCGGGTTACGACCCGCT
AAAGCTAGAGACTTTAACGGAGAAGAAGACGGTGTTTGAAGGAACTTGAGAGCTTCTCTG
ACGACGTACTTACCGGTAAATCCGGATGCTCCGAGTATGACCATATCGTAAACCGGTTCG
GGTTTTTGGGTTGGGTTCATCGTGATCGGAATCTAAGACGGAGAATCTTTTTGGGTTCGA
CGACGAAGAGATAGATATTTCGAAGATAATAATACAGTAATAGTGTCTTTATGGATCAGC
AATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCATTT
CAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGATAAAACGACA
AATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAAT
CTTTATTTCGACGTGTCTACATTCACTCCCCAAATGG
Primers used for PCR KU05 - 8474, show primer details
   
Sequence Name 80-K102435-0022-817-G01C-OriL
GenBank Accession LN513934 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>80-K102435-0022-817-G01C-OriL
GCCATTTACATTGAATATATCCTGTCACCGACAACGTCGACGTTACACGTCATTGTGAGT
GAAATTGTAATTTAAGGAATAATAATCTGATTTGATTTTGATTGGTATATCAAATAGTAA
CACTTGACTTCACACACCATTTGTACTCATATTACGAGAACTACACGCTGTCTCAGATTT
AGATATAGACAAAGAGCGGCACGTAGTGTAACTAAGATGTAACTACCTTACTACCTTAGG
AAAATGTTAAACTTGTTTAACCAAGTTCTTTCTCTTTAATTGGAAGTTTACTCGGAAAAG
CTGTAAGCACCACTTGATTCGAGATATTGAGGACTAGCCTCGGATCCGATGACTTATTTG
TGTTTTCTTCCGTCAAATGGTGATTTTTTTCGTTGATTTCATTTTTATTTGTGGTCTTTT
TCGTATTTTTGTTTATTTCGTAGATTTCGGTCTTCTGTATCTCTTCGTTGTATCTTTGTA
TTCTATAAACAAAAATAGTATAAAATATGTTACCAAAAACAATCTCTCACTAGATGCTCC
AAGCGTTTGTTTTCCCTCCATTAATTGTTTCTTTG
   
Sequence Name 80-K102436-0022-817-G01C-KU05
GenBank Accession LN513935 [GenBank]
Sequencing primer gene specific primer, KU05: 5'-CAAAGAAACAATTAATGGAGGGAA-3'
Sequence (A. th genome BLAST matches underlined)
>80-K102436-0022-817-G01C-KU05
TTTTTGGTACATATTTTATACTATTTTTGTTTATAGAATACAAAGATACAACGAAGAGAT
ACAGAAGACCGAAATCTACGAAATAAACAAAAATACGAAAAAGACCACAAATAAAAATGA
AATCAACGAAAAAAATCACCATTTGACGGAAGAAAACACAAATAAGTCATCGGATCCGAG
GCTAGTCCTCAATATCTCGAATCAAGTGGTGCTTACAGCTTTTCCGAGTAAACTTCCAAT
TAAAGAGAAAGAACTTGGTTAAACAAGTTTAACATTTTCCTAAGGTAGTAAGGTAGTTAC
ATCTTAGTTACACTACGTGCCGCTCTTTGTCTATATCTAAATCTGAGACAGCGTGTAGTT
CTCGTAATATGAGTACAAATGGTGTGTGAAGTCAAGTGTTACTATTTGATATACCAATCA
AAATCAAATCAGATTATTATTCCTTAAATTACAATTTCACTCACAATGACGTGTAACGTC
GACGTTGTCGGTGACAGGATATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCTACA
TGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTT
TTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGAT
AAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAA
TTCGGAAATCTTTATTTCGACGTGTCTACATTC

Last Updated on 06.12.2018 16:11