Sequences from confirmation amplicon


Confirmation sequences for line SALK_009373c and hit At3g16910 are shown.
Line ID SALK_009373c
Locus At3g16910 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:5774043
Primers used for PCR BN33 - R204, show primer details
   
Sequence Name 50-K107035-SALK_009373C-R210
GenBank Accession LN485495 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>50-K107035-SALK_009373C-R210
GGTCCTTCCCCGTATGCGCTTGGAAACCCGAGTGGGATTCCCTCCCTCCTGAGACGCAGG
CCAAGCTCAATGCTCGCCAAGGTGTCCGCTATACTGGCATGGAGCAGCTTGATGTCATTG
ACACTCAGACCGGAAAACCTGTTCCTGCAGATGGAAAAACCGCAGGAGAAATTGTTTTCC
GAGGGAATATGGTGATGAAAGGCTATCTAAAGAATCCGGAAGCGAACAAAGAGACATTTG
CTGGTGGGTGGTTCCACTCGGGGGATATTGCAGTGAAACACCCAGACAACTATATCGAGA
TCAAGGACAGGTCAAAGGACGTTATAATCTCTGGGGGCGAGAATATCAGCAGTGTCGAAG
TCGAAAACGTAGTGTACCATCACCCCGCGGTTCTTGAAGCCTCTGTTGTGGCCAGGCCAG
ACGAGCGGTGGCAAGAATCTCCGTGTGCGTTTGTGACACTTAAGAGCGATTACGAGAAGC
ATGACCAGAATAAGTTGGCTCAGGATATAATGAAATTCTGCCGGGAGAAGCTTCCGGCAT
ATTGGGTCCCAAAGTCAGTGGTGTTTGGGCCGTTACCAAAGACAGCAACTGGAAAAATTC
AGAAGCATATTCTGAGGACCAAGGCCAAAGAGATGGGACCAGTACCAAGAAGCAGGTTAT
AGGAAGTGATAAAGCTTTAAGAACAACATTTTGAAAATAATGTGTTGTATGTTTTTGCGG
AACTTTGCCTTGTGTGTAAACTTTCAAATGATAACAGAAAATATTCTCTTTATTTTCAAC
GCTTTCATTGTGTTTATAAATCGTTTACTCTTGATTAATAACAGCGATAAAGATTGACAT
ACTAATAGCAATGGTATAAACAACCATACTTAATTAAGTCCACAGAAAGATTTACACACT
CTTGCAACAGCTTTTCTCACATTAAGCACTCAAAACAATGTGCTTTCCGTAACAACA
   
Sequence Name 58-K107036-SALK_009373C-BN33
GenBank Accession LN485680 [GenBank]
Sequencing primer gene specific primer, BN33: 5'-GTGTGTTTTGCCAATGTTTGTTAC-3'
Sequence (A. th genome BLAST matches underlined)
>58-K107036-SALK_009373C-BN33
GCTGTTGCAGAGTGTGTAAATCTTTCTGTGGACTTAATTAAGTATGGTTGTTTATACCAT
TGCTATTAGTATGTCAATCTTTATCGCTGTTATTAATCAAGAGTAAACGATTTATAAACA
CAATGAAAGCGTTGAAAATAAAGAGAATATTTTCTGTTATCATTTGAAAGTTTACACACA
AGGCAAAGTTCCGCAAAAACATACAACACATTATTTTCAAAATGTTGTTCTTAAAGCTTT
ATCACTTCCTATAACCTGCTTCTTGGTACTGGTCCCATCTCTTTGGCCTTGGTCCTCAGA
ATATGCTTCTGAATTTTTCCAGTTGCTGTCTTTGGTAACGGCCCAAACACCACTGACTTT
GGGACCCAATATGCCGGAAGCTTCTCCCGGCAGAATTTCATTATATCCTGAGCCAACTTA
TTCTGGTCATGCTTCTCGTAATCGCTCTTAAGTGTCACAAACGCACACGGAGATTCTTGC
CACCGCTCGTCTGGCCTGGCCACAACAGAGGCTTCAAGAACCGCGGGGTGATGGTACACT
ACGTTTTCGACTTCGACACTGCTGATATTCTCGCCCCCAGAGATTATAACGTCCTTTGAC
CTGTCCTTGATCTCGATATAGTTGTCTGGGTGTTTCACTGCAATATCCCCCGAGTGGAAC
CACCCACCAGCAAATGTCTCTTTGTTCGCTTCCGGATTCTTTAGATAGCCTTTCATCACC
ATATTCCCTCGGAAAACAATTTCTCCTGCGGTTTTTCCATCTGCAGGAACAGGTTTTCCG
GTCTGAGTGTCAATGACATCAAGCTGCTCCATGCCAGTATAGCGGACACCTTGGCGAGCA
TTGAGCTTGGCCTGCGTCTCAGGAGGGAGGGAATCCCACTCGGGTTTCCAAGCGCATACG
GTGGGAGGACCATAAGTCTCGGGATAACTTAATACACATTGCGGACTTTTTAATGTACTG
GGGTGGTT
Primers used for PCR 48xh - LBb3, show primer details
   
Sequence Name 18-K119050-SALK_009373C-48xh
GenBank Accession LN484800 [GenBank]
Sequencing primer gene specific primer, 48xh: 5'-TTATGGAGGAGAAAGCTGGAAGTA-3'
Sequence (A. th genome BLAST matches underlined)
>18-K119050-SALK_009373C-48xh
CTCCTGAGTCACTTAACCNGGGCTTTGTCGAAGGGAGCTATAGAATATGAGGATTTTCTT
GCAACCGGAGATCCAAATTATCCGTGGCAGCCACCAGCTGATGAGTGGCAGAGCATCGCT
CTTGGTTATACCTCGGGAACAACTGCTAGTCCGAAAGGAGTGGTGCTTCATCATCGAGGT
GCGTATATAATGGCTTTGAGCAATCCTCTCATTTGGGGGATGCAAGATGGTGCTGTTTAC
TTGTGGACTCTCCCTATGTTTCATTGCAACGGTTGGTGTTTCCCTTGGTCCCTTGCTGTG
CTCTCTGGTACAAGCATCTGTCTCCGTCAGGTAGTACTTGAGAGAGTTACTTTTCACTTA
AGAAAAGAAGTTCACATAAATCAGAAGAAGAGCTGATTAAATTTTGGTTTCAGGTTACGG
CGAAGGAAGTGTATTCAATGATAGCCAAATACAAGGTAACTCATTTCTGTGCAGCTCCTG
TGGTCCTCAACGCTATTGTCAATGCTCCTAAAGAAGACACTATCCTTAGACAACTTAATA
ACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGC
AACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTG
GTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGTGGTTCCGAATCGGGCAAA
   
Sequence Name 02-K119049-SALK_009373C-R210
GenBank Accession LN484324 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>02-K119049-SALK_009373C-R210
CAATAGCGNTTGAGGACCACAGGAGCTGCACAGAAATGAGTTACCTTGTATTTGGCTATC
ATTGAATACACTTCCTTCGCCGTAACCTGAAACCAAAATTTAATCAGCTCTTCTTCTGAT
TTATGTGAACTTCTTTTCTTAAGTGAAAAGTAACTCTCTCAAGTACTACCTGACGGAGAC
AGATGCTTGTACCAGAGAGCACAGCAAGGGACCAAGGGAAACACCAACCGTTGCAATGAA
ACATAGGGAGAGTCCACAAGTAAACAGCACCATCTTGCATCCCCCAAATGAGAGGATTGC
TCAAAGCCATTATATACGCACCTCGATGATGAAGCACCACTCCTTTCGGACTAGCAGTTG
TTCCCGAGGTATAACCAAGAGCGATGCTCTGCCACTCATCAGCTGGTGGCTGCCACGGAT
AATTTGGATCTCCGGTTGCAAGAAAATCCTCATATTCTATAGCTCCCTTCGACAAAGCCC
GGTTAAGTGACTCAGGAGCACAGGTGTGATCACCAATGACGATTAAAAGCGGGCGTTTGA
AGCTACTTCCAGCTTTCTCCTCCATAA

Last Updated on 06.12.2018 16:11