Sequences from confirmation amplicon


Confirmation sequences for line SALK_012298 and hit At1g13800 are shown.
Line ID SALK_012298
Locus At1g13800 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:4732293
Primers used for PCR AW41 - R204, show primer details
   
Sequence Name 08-K107118-SALK_012298C-R210
GenBank Accession LN484479 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>08-K107118-SALK_012298C-R210
TGTTTGCTGGTGGATTGGCTACGAATGGTCTTGCACAAGAGGCATTCGAAACTCTGAAAA
TGATGGAAAATCGGGGTGTAAAACCCACTTATGTTACACACAACATGGTCATTGAAGGCC
TGATTGATGCAGGTGAACTAGACAAGGCTGAAGCTTTCTATGAGAGTTTGGAACATAAAT
CTCGGGAAAACGATGCAAGTATGGTGAAGGGTTTTTGTGCCGCTGGCTGTCTTGATCATG
CCTTTGAACGATTCATTAGACTGGAATTTCCTCTGCCCAAGAGTGTGTATTTTACTCTAT
TCACTAGTCTTTGCGCCGAGAAAGATTATATCAGCAAAGCTCAAGACTTACTGGATAGAA
TGTGGAAACTTGGAGTCGAACCTGAGAAGAGCATGTATGGAAAGTTAATTGGTGCTTGGT
GTCGAGTTAATAATGTGAGAAAAGCCCGGGAGTTTTTTGAAATTTTAGTTACTAAAAAGA
TTGTCCCTGATTTGTTCACTTATACAATCATGATTAACACCTATTGCCGGTTAAACGAGC
CGAAGCAAGCCTATGCTCTTTTTGAAGACATGAAGAGGAGAGATGTCAAACCTGATGTGG
TAACATACTCAGTTTTACTCAATAGCGATCCAGAGTTGGATATGAAGAGGGAAATGGAAG
CCTTTGATGTTATTCCAGACGTCGTCTACTACACAATCATGATTAACAGATATTGCCATT
   
Sequence Name 24-K107119-SALK_012298C-AW41
GenBank Accession LN484965 [GenBank]
Sequencing primer gene specific primer, AW41: 5'-GGTCGTTTAAATGGCAATATCTGT-3'
Sequence (A. th genome BLAST matches underlined)
>24-K107119-SALK_012298C-AW41
CAAGGCTTCATTTCCCTCTTCATATCCACTCTGGATCGCTATTGAGTAAAACTGAGTATG
TTACCACATCAGGTTTGACATCTCTCCTCTTCATGTCTTCAAAAAGAGCATAGGCTTGCT
TCGGCTCGTTTAACCGGCAATAGGTGTTAATCATGATTGTATAAGTGAACAAATCAGGGA
CAATCTTTTTAGTAACTAAAATTTCAAAAAACTCCCGGGCTTTTCTCACATTATTAACTC
GACACCAAGCACCAATTAACTTTCCATACATGCTCTTCTCAGGTTCGACTCCAAGTTTCC
ACATTCTATCCAGTAAGTCTTGAGCTTTGCTGATATAATCTTTCTCGGCGCAAAGACTAG
TGAATAGAGTAAAATACACACTCTTGGGCAGAGGAAATTCCAGTCTAATGAATCGTTCAA
AGGCATGATCAAGACAGCCAGCGGCACAAAAACCCTTCACCATACTTGCATCGTTTTCCC
GAGATTTATGTTCCAAACTCTCATAGAAAGCTTCAGCCTTGTCTAGTTCACCTGCATCAA
TCAGGCCTTCAATGACCATGTTGTGTGTAACATAAGTGGGTTTTACACCCCGATTTTCCA
TCATTTTCAGAGTTTCGAATGCCTCTTGTGCAAGACCATTCGTAGCCAATCCACCAGCAA
ACAAATTGACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTACTGGGGTG
GTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTNA
GAGAGTTGCAGCAG
Primers used for PCR AW42 - LBb3, show primer details
   
Sequence Name 80-K119133-SALK_012298C-AW42
GenBank Accession LN486227 [GenBank]
Sequencing primer gene specific primer, AW42: 5'-CTCAATCCTTCAATGCTATTGTCA-3'
Sequence (A. th genome BLAST matches underlined)
>80-K119133-SALK_012298C-AW42
TCTATTTAAGAGTTAGAGAGACGAACATTTCTCTTGATAGAGTTTGCTACAATGTTGCAT
TTGATGCTTTGGGAAAGCTTGGCAAAGTAGAAGAAGCTATTGAGTTGTTCAGAGAAATGA
CGGGTAAAGGAATAGCTCCTGATGTCATCAACTACACGACTTTGATAGGGGGTTGCTGTC
TACAAGGTAAATGTTCTGATGCCTTTGATTTGATGATTGAAATGGACGGAACAGGTAAAA
CACCTGATATTGTTATATATAACGTACTTGCTGACAACTTAATAACACATTGCGGACGTT
TTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCT
TCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGC
GAAAATCCTGTTTGATGGTGGTTCCGAAATCGGCAAAA
   
Sequence Name 66-K119132-SALK_012298C-R210
GenBank Accession LN485914 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>66-K119132-SALK_012298C-R210
CAATATCAGGGTGTTTTACCTGGTTCCGTCCATTTCAATCATCAAATCAAAGGCATCAGA
ACATTTACCTTGTAGACAGCAACCCCCTATCAAAGTCGTGTAGTTGATGACATCAGGAGC
TATTCCTTTACCCGTCATTTCTCTGAACAACTCAATAGCTTCTTCTACTTTGCCAAGCTT
TCCCAAAGCATCAAATGCAACATTGTAGCAAACTCTATCAAGAGAAATGTTCGTCTCTCT
AAACTCTTTAAATAGATCATAAGCTTCCGAGAAATTTCCCATCTGACAATAGCATTGAAG
GATTGAG

Last Updated on 06.12.2018 16:11