Sequences from confirmation amplicon


Confirmation sequences for line SALK_040252c and hit At1g63440 are shown.
Line ID SALK_040252c
Locus At1g63440 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:23528028
Primers used for PCR CG25 - LBb3, show primer details
   
Sequence Name 17-K116528-SALK_040252C-CG25
GenBank Accession LN484755 [GenBank]
Sequencing primer gene specific primer, CG25: 5'-TTTCAAAAAGTCTCATCATTTCCC-3'
Sequence (A. th genome BLAST matches underlined)
>17-K116528-SALK_040252C-CG25
ACTCAATTCGATCGAGAAGAACAGATTCGCGCACAGACGATCGATTACATGGCGACGAAG
CTTTTGTCGCTTACATGCATAAGGAAAGAGAGATTCAGCGAGCGTTACCCTCTGGTGCGG
AAGCACCTTACCAGGTCTCGCGACGGCGGCGGAGGATCATCGTCGGAGACGGCGGCTTTT
GAGATCGATGATCCGATTTCCAGGGCGGTTTTTCAAGTGTTAGGAATGACTTGCTCTGCT
TGCGCTGGATCTGTTGAAAAGGCTATCAAGCGTCTCCCTGGAATTCACGATGCTGTCATC
GATGCTCTGAATAATCGTGCTCAGATTCTGTTTTACCCTAACTCTGTCGATGTAAGCTAT
GATATTCTCTCGAATCTCGGTTGAATTGTTTCTGAGAAGACTTGATTTGGGCAAACCAGG
ATATATTGTGGTGTAAACAAATTGACGCTTAGACAACTTAATAACACATTGCGGACGTTT
TTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTT
CACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCG
AAAATCCTGTTTGATGGTGGTTC
   
Sequence Name 09-K116527-SALK_040252C-R210
GenBank Accession LN484528 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>09-K116527-SALK_040252C-R210
CATTTGTTTACCACAATATATCCTGGTTTGCCCAAATCAAGTCTTCTCAGAAACAATTCA
ACCGAGATTCGAGAGAATATCATAGCTTACATCGACAGAGTTAGGGTAAAACAGAATCTG
AGCACGATTATTCAGAGCATCGATGACAGCATCGTGAATTCCAGGGAGACGCTTGATAGC
CTTTTCAACAGATCCAGCGCAAGCAGAGCAAGTCATTCCTAACACTTGAAAAACCGCCCT
GGAAATCGGATCATCGATCTCAAAAGCCGCCGTCTCCGACGATGATCCTCCGCCGCCGTC
GCGAGACCTGGTAAGGTGCTTCCGCACCAGAGGGTAACGCTCGCTGAATCTCTCTTTCCT
TATGCATGTAAGCGACAAAAGCTTCGTCGCCATGTAATCGATCGTCTTGTGCGCGAATCT
TGTTCTTCTCGTATCGAATTTGAGTTTTTAAAAAGCTTTTAGGTTTATGGGAAATGATGA
GACTTTTTGAAAACTCAAATTCGATACGAGAAGAACAAGATTCGCGCACAAGACGATCGA
TTACATGGCGACGAAGCTTTTGTCGCTTACATGCATAAGGAAAGAGAGAT
Primers used for PCR CG26 - R212, show primer details
   
Sequence Name 78-K116547-SALK_040252C-CG26
GenBank Accession LN486195 [GenBank]
Sequencing primer gene specific primer, CG26: 5'-TCATCAGTAAGCTCACCATCAATC-3'
Sequence (A. th genome BLAST matches underlined)
>78-K116547-SALK_040252C-CG26
GCTCCAGAGTCTAGGATCATAATGAATCTCAGCTTCTTCAATTGCTAAAGCCACATGTGC
TCTTTGTACACCATTAACCGATTGCAAAACTCTTTCGATTGTTGAAGAACACGAAGTACA
AGTCATACCATTAATTCTTATTCTACAAACTTGTCTCGACCTCTCATTCGCTTCATTTTC
GATCAACGATGCTTCAAATCCAGCATCCTCAATAGTCTCACGAATTGTCTCCACCTATAA
ATCCACAATTACACAGAAAAAGACAATTCAACTCTCTCAAACACTGATAGTTTAAACTGA
AGGCGGGAAACGACAATCTGATCATGAGCGGAGAATTAAGGGAGTCACGTTATGACCCCC
GCCGATGACGCGGGACAAGCCGTTTTACGTTTGGAACTGACAGAACCGCAACGTTGAAGG
AGCCACTCAGCCGCGGGTTTCTGGAGTTTAATGAGCTAAGCACATACGTCAGAAACCATT
ATTGCGCGTTCAAAAGTCACCTAAGG
   
Sequence Name 77-K116546-SALK_040252C-R214
GenBank Accession queueing for submission to ENA/GenBank
Sequencing primer gene specific primer, R214: 5'-AACGTTGCGGTTCTGTCAGTTCC-3'
Sequence (A. th genome BLAST matches underlined)
>77-K116546-SALK_040252C-R214
TCAATATAGAGAAAAATAATGACTAATTACCA
Primers used for PCR 36tf - R212, show primer details
   
Sequence Name 17-K118412-SALK_040252C-36tf
GenBank Accession LN484762 [GenBank]
Sequencing primer gene specific primer, 36tf: 5'-CAGTAAGCTCACCATCAATCTTCA-3'
Sequence (A. th genome BLAST matches underlined)
>17-K118412-SALK_040252C-36tf
TATAAGCACAGCTTCAAAACCAGCATTTTCTATCTCCTCCAATAGTCTATCATAGCTCGA
GAGTCTAGGATCATAATGAATCTCAGCTTCTTCAATTGCTAAAGCCACATGTGCTCTTTG
TACACCATTAACCGATTGCAAAACTCTTTCGATTGTTGAAGAACACGAAGTACAAGTCAT
ACCATTAATTCTTATTCTACAAACTTGTCTCGACCTCTCATTCGCTTCATTTTCGATCAA
CGATGCTTCAAATCCAGCATCCTCAATAGTCTCACGAATTGTCTCCACCTATAAATCCAC
AATTACACAGAAAAAGACAATTCAACTCTCTCAAACACTGATAGTTTAAACTGAAGGCGG
GAAACGACAATCTGATCATGAGCGGAGAATTAAGGGAGTCACGTTATGACCCCCGCCGAT
GACGCGGGACAAGCCGTTTTACGTTTGGAACTGACAGAACCGCAACGTTGAAGGAGCCAC
TCAGCCGCGGGTTTCTGGAGTTTAATGAGCTAAGCACATACGTCAGAAACCATTATTGCG
CGTTCAAAAGTCGCCTAAGG
   
Sequence Name 01-K118411-SALK_040252C-R214
GenBank Accession LN484294 [GenBank]
Sequencing primer gene specific primer, R214: 5'-AACGTTGCGGTTCTGTCAGTTCC-3'
Sequence (A. th genome BLAST matches underlined)
>01-K118411-SALK_040252C-R214
GTCGCGTCTCGGCGGGGGTCTAACGTGACTCCCTTAATTCTCCGCTCATGATCAGATTGT
CGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTGAGAGAGTTGAATTGTCTTTTTCTGT
GTAATTGTGGATTTATAGGTGGAGACAATTCGTGAGACTATTGAGGATGCTGGATTTGAA
GCATCGTTGATCGAAAATGAAGCGAATGAGAGGTCGAGACAAGTTTGTAGAATAAGAATT
AATGGTATGACTTGTACTTCGTGTTCTTCAACAATCGAAAGAGTTTTGCAATCGGTTAAT
GGTGTACAAAGAGCACATGTGGCTTTAGCAATTGAAGAAGCTGAGATTCATTATGATCCT
AGACTCTCGAGCTATGATAGACTATTGGAGGAGATAGAAAATGCTGGTTTTGAAGCTGTG
CTTATAAGTACAGGCGAGGATGTGAGCAAGATTGATTTGAAGATTGATGGTGAGCTTACT
GACCC

Last Updated on 06.12.2018 16:11