Sequences from confirmation amplicon


Confirmation sequences for line SALK_040299c and hit At1g03470 are shown.
Line ID SALK_040299c
Locus At1g03470 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:866389
Primers used for PCR BL11 - R204, show primer details
   
Sequence Name 91-K106979-SALK_040299C-R210
GenBank Accession LN486340 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>91-K106979-SALK_040299C-R210
CGTCATTTGGTACACGTTTCTTAAGCTCTGAGTTCTCTTCTTTAAGCATTTGTATTGCTA
CACTCATTTGCCTTATAGCTTCTCTCTTCTCTTCATCTTTCTCTCTCACCATTTCACTGT
AAACCTTATTCTCCTCTCTCAGCCTCTCTATCTCTATCTTCATCATCTCAGAATTTCCAT
TACCTTCACTGTAAACGACTTCCGATGGTTCTATTTCCTCAACAATGCCATCAATTTCAC
TTTCATCGACCCATTTGCTTTCACCGTTATCTATTTCAGACTCCGCATACTCCTCATGAG
TCTCACAAGCCTCAGACCAAGAAGACTCATCACAAGTTGATGATTTCTCATGACTCTCCG
AGTCTGAGCCATGTTTATGCACAGAAGAGGGTCTCAACAAGTCGTACCTCTCGGCCAAGG
AGCGATGTGAACGGTAGAATTCTTCCACCATAGCTATAAGCTCGGGCCTTTTCTTGTAAT
ACATCTCAGCTCGTGCCGCAAAAGAATCAGCATCCTCATCAATCACTCTCAGCATTTCCT
TTGTCTTTTCATCCAATTCTTCAATAACACAATCAAAGTTCACCATGTCAAAACCTCAAT
GAAGTTAAATAATTGTGTATCATTACTTAGTCTCAGAAAGATAAGATACCAAAAGAGAAT
CATCTACGACTATTATAACCCAATTACAACAAGTATCTTGATAACCAAAGACCTTTGAGA
GGACCAAAGACCCATACACCAATATCAACACTTGGATTAAGACATTAAAAGAACCAAAAT
AAACGTGTCNAACCTTGATGAAACTAAATACCGATNAGATACCAAGAGAAGATACCAAGA
GAAGAGCATCTTCTCAAC
   
Sequence Name 92-K106980-SALK_040299C-BL11
GenBank Accession LN486345 [GenBank]
Sequencing primer gene specific primer, BL11: 5'-AGCTTTGTTGTTGTTGGAGAAGAT-3'
Sequence (A. th genome BLAST matches underlined)
>92-K106980-SALK_040299C-BL11
GTTTATCAAGGTTTGACACGTTTATTTTGGTTCTTTTAATGTCTTAATCCAAGTGTTGAT
ATTGGTGTATGGGTCTTTGGTCCTCTCAAAGGTCTTTGGTTATCAAGATACTTGTTGTAA
TTGGGTTATAATAGTCGTAGATGATTCTCTTTTGGTATCTTATCTTTCTGAGACTAAGTA
ATGATACACAATTATTTAACTTCATTGAGGTTTTGACATGGTGAACTTTGATTGTGTTAT
TGAAGAATTGGATGAAAAGACAAAGGAAATGCTGAGAGTGATTGATGAGGATGCTGATTC
TTTTGCGGCACGAGCTGAGATGTATTACAAGAAAAGGCCCGAGCTTATAGCTATGGTGGA
AGAATTCTACCGTTCACATCGCTCCTTGGCCGAGAGGTACGACTTGTTGAGACCCTCTTC
TGTGCATAAACATGGCTCAGACTCGGAGAGTCATGAGAAATCATCAACTTGTGATGAGTC
TTCTTGGTCTGAGGCTTGTGAGACTCATGAGGAGTATGCGGAGTCTGAAATAGATAACGG
TGAAAGCAAATGGGTCGATGAAAGTGAAATTGATGGCATTGTTGAGGAAATAGAACCATC
GGAAGTCGTTTACAGTGAAGGTAATGGAAATTCTGAGATGATGAAGATAGAGATAGAGAG
GCTGAGAGAGGAGAATAAGGTTTACAGTGAAATGGTGAGAGAGAAAGATGAAGAGAAGAG
AGAAGCTATAAGGCAAATGAGTGTAGCAATACAAATGCTTAAAGAAGAGAACTCAGAGCT
TAAGAAACGTGTTACCAAATTGACGCTNAAACAACTTAATAACACATTGCGGACGTTTTT
ATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCAC
CGCCTGGCCCTG
Primers used for PCR 30xl - LBb3, show primer details
   
Sequence Name 71-K119129-SALK_040299C-30xl
GenBank Accession LN486043 [GenBank]
Sequencing primer gene specific primer, 30xl: 5'-TCTACATCTCACCAGTCTCTGGC-3'
Sequence (A. th genome BLAST matches underlined)
>71-K119129-SALK_040299C-30xl
GGATTACTTATCCTCTAGTGAGACCCAAAAGTCTTCAGACTTATGATCATATAAAAGAAT
ATCATTCGACAAAACCACAATCATATAGAAGAACATTATGAAAATCTAAAATAATGGTCA
AACCTTTTAAACAACAACTTCTTATCACCATTTATTACACACATAAAGTAAAAGAAAACA
AACTTACAGATATTAAAGAACAAAACAATTGATTTCAAAAGAAAGACAATTATATTTAAA
CAAGAAACGAACAATAGAAAATTAAACAAATTGACGCTTAGACAACTTAATAACACATTG
CGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTG
ATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCC
CAGCAGGCGAAAATCCTGTTTGATGGTGGTTCCGAAATCGGCAAAAT
   
Sequence Name 57-K119128-SALK_040299C-R210
GenBank Accession LN485675 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>57-K119128-SALK_040299C-R210
CATTTGTTTATTTTCTATTGTTCGTTTCTTGTTTAAATATAATTGTCTTTCTTTTGAAAT
CAATTGTTTTGTTCTTTAATATCTGTAAGTTTGTTTTCTTTTACTTTATGTGTGTAATAA
ATGGTGATAAGAAGTTGTTGTTTAAAAGGTTTGACCATTATTTTAGATTTTCATAATGTT
CTTCTATATGATTGTGGTTTTGTCGAATGATATTCTTTTATATGATCATAAGTCTGAAGA
CTTTTGGGTCTCACTATGAGGATAAGTAAATTTCCCAAAGATCTGCAAATTTGAAATGCC
AGAGACTGGGNAGATGTAGA

Last Updated on 06.12.2018 16:11