Sequences from confirmation amplicon


Confirmation sequences for line SALK_040788 and hit At3g11240 are shown.
Line ID SALK_040788
Locus At3g11240 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:3519787
Primers used for PCR BN23 - R204, show primer details
   
Sequence Name 07-K107118-SALK_040788C-R210
GenBank Accession LN484447 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>07-K107118-SALK_040788C-R210
GTCATTTGTCATCTGAGGAATAACTTGGGTAGCTGAAAGGAAGTTGATATGACCCTTGGA
GACCTTAACAGAAAAACCAGTAAACTCTCCAACCTTATTCATTGCACTTAACAACTTCTC
AGAAACAGCCTCTGGTGATAATCTGTTTTCTTCTACGTTTTTGCCTTTCTCCAATGTCTG
TGTGTGTTTCATAGCAGCTACTATTGGAAAAGCAATGTTGCTGGTGTATAAGAGGTCTTC
TGACCCTTCAGCTAGTTTCTTCCTTTTAGCAGAAAAAACTTTCTTTACTGAAGCTTTGGG
AATCTGAACATTAGAAGGAAACTCACCACTCTGTATGCATTTTTGTACCGCATTATCAAT
TTGTTCAGACAAATCTTTCATGATTGGTTCCAGTTCATTGTTTTTTTCTCTTTTACGGNC
TCCA
   
Sequence Name 23-K107119-SALK_040788C-BN23
GenBank Accession LN484936 [GenBank]
Sequencing primer gene specific primer, BN23: 5'-CTTGGAGCTGCTAAAAGAGAAAAA-3'
Sequence (A. th genome BLAST matches underlined)
>23-K107119-SALK_040788C-BN23
TCTGAACAAATTGATAATGCGGTACAAAAATGCATACAGAGTGGTGAGTTTCCTTCTAAT
GTTCAGATTCCCAAAGCTTCAGTAAAGAAAGTTTTTTCTGCTAAAAGGAAGAAACTAGCT
GAAGGGTCAGAAGACCTCTTATACACCAGCAACATTGCTTTTCCAATAGTAGCTGCTATG
AAACACACACAGACATTGGAGAAAGGCAAAAACGTAGAAGAAAACAGATTATCACCAGAG
GCTGTTTCTGAGAAGTTGTTAAGTGCAATGAATAAGGTTGGAGAGTTTACTGGTTTTTCT
GTTAAGGTCTCCAAGGGTCATATCAACTTCCTTTCAGCTACCCAAGTTACTTCCTCAGAT
AGACAAATTGACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTACTGGGG
TGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCT
GAGAGAGTTGCAGC
Primers used for PCR BN24 - LBb3, show primer details
   
Sequence Name 79-K119133-SALK_040788C-BN24
GenBank Accession LN486215 [GenBank]
Sequencing primer gene specific primer, BN24: 5'-GTAGTTTCCAAGAGACAAGGATGC-3'
Sequence (A. th genome BLAST matches underlined)
>79-K119133-SALK_040788C-BN24
CAACATTTAGGAAGAATATCAATCACCCCAACAGCAATTAGACGGTCATCAACTCGGTAT
TGTTGATGGAAAGAACCAAAGCCACAAAGAGGAATCTTTTCTTCATCATCATAACCTGAA
GAAGGAACTTCAGTGAGCGGAGTGTCTACCAAAAACCGTTTGTATGAAGTTTCTGAGATG
CTCTCCGGCTTATCATTATGCACTTTCATTTGATACCGTTTGTATAATTCATATTCCTCT
GGTTCAAAACTCGACCTTTTCAAGTGCATCTCCAGCTTCCGCTTTCTTGCATGAAGCTTG
TTCGAAGAAGACTTTATTGTTGTAGCACATAGGCTTAACAAATTGACGCTTAGACAACTT
AATAACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGAC
GGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCAC
GCTGGTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGTGGTTCCGAATCGGGCAAAA
   
Sequence Name 65-K119132-SALK_040788C-R210
GenBank Accession LN485885 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>65-K119132-SALK_040788C-R210
CATTTGTTAGCCTATGTGCTACAACAATAAAGTCTTCTTCGAACAAGCTTCATGCAAGAA
AGCGGAAGCTGGAGATGCACTTGAAAAGGTCGAGTTTTGAACCAGAGGAATATGAATTAT
ACAAACGGTATCAAATGAAAGTGCATAATGATAAGCCGGAGAGCATCTCAGAAACTTCAT
ACAAACGGTTTTTGGTAGACACTCCGCTCACTGAAGTTCCTTCTTCAGGTTATGATGATG
AAGAAAAGATTCCTCTTTGTGGCTTTGGTTCTTTCCATCAACAATACCGAGTTGATGACC
GTCTAATTGCTGTTGGGGTGATTGATATTCTTCCTAAATGTTTGTCTAGTAAATACCTGT
TCTGGGATCCGGATTTCGCATCCTTGTCTCTGNGAAACTAC

Last Updated on 06.12.2018 16:11