Sequences from confirmation amplicon


Confirmation sequences for line SALK_054203 and hit At3g02500 are shown.
Line ID SALK_054203
Locus At3g02500 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:519638
Primers used for PCR CG63 - LBb3, show primer details
   
Sequence Name 45-K107479-SALK_054203C-CG63
GenBank Accession LN485387 [GenBank]
Sequencing primer gene specific primer, CG63: 5'-ATAACCTTTCGAGAAAACAATGGA-3'
Sequence (A. th genome BLAST matches underlined)
>45-K107479-SALK_054203C-CG63
GGATTACCCCAAAAAACAAAAGACAAAAAACTAAAACTTTATTGTGAGGTGTCTCTAATA
TATATGTCAGTCATCCAATTAAGATTCAACATATACTATCTTACAAACTTTCGAGATAAC
TTATTTGAAAATACCCAATATAATGAAACAAATTTAAAGATGACAAAAGTACTACAAAAA
GTCAATATTTTAAAGAATAAAAAAAAACTCAACCATCCCTTTTAAATTCATATATGTACA
TTTCTTCCCTCTCTCCATCATCCTTAGCTTTACCTTGGCTCTTTATTTTAATTTCCAATG
GTTTTGCGTGGCGAAGAGCTTGAGTTTAATCTAAGAGAATGGGCACGACAAGGCCATTTA
ACTCGCGAAGATCAAAGTTCTAGAAGGTTCTCTGCCTCTTGTATCCGAAGCTTCCGAGAA
GACCACAAGTCTTGTACAACAAACGTCACCATCTCTAGTACTGCCTCTTCTCCGGGTTAC
TCCCTCAAAGGTAATAGCCTCTTTTGATGCTAATTACTTCTTAGAAAAACGTTTTGAAAA
TTGAATTTTTGCGACAGGATATATTGTGGTGTAAACAAATTGACGCTTAGACAACTTAAT
AACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGG
CAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCT
GGTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGTGGTTCC
   
Sequence Name 61-K107480-SALK_054203C-LBb3
GenBank Accession LN485757 [GenBank]
Sequencing primer T-DNA primer, LBb3: 5'-ATTTTGCCGATTTCGGAAC-3'
Sequence (A. th genome BLAST matches underlined)
>61-K107480-SALK_054203C-LBb3
GGGCAACCAGCGTGGACCGCTTGCTGCACTCTCTCAGGGCCAGGCGGTGAAGGGCAATCA
GCTGTTGCCCGTCTCACTGGTGAAAAGAAAAACCACCCCAGTACATTAAAAACGTCCGCA
ATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGTCGCAAA
AATTCAATTTTCAAAACGTTTTTCTAAGAAGTAATTAGCATCAAAAGAGGCTATTACCTT
TGAGGGAGTAACCCGGAGAAGAGGCAGTACTAGAGATGGTGACGTTTGTTGTACAAGACT
TGTGGTCTTCTCGGAAGCTTCGGATACAAGAGGCAGAGAACCTTCTAGAACTTTGATCTT
CGCGAGTTAAATGGCCTTGTCGTGCCCATTCTCTTAGATTAAACTCAAGCTCTTCGCCAC
GCAAAACCATTGGAAATTAAAATAAAGAGCCAAGGTAAAGCTAAGGATGATGGAGAGAGG
GAAGAAATGTACATATATGAATTTAAAAGGGATGGTTGAGTTTTTTTTTATTCTTTAAAA
TATTGACTTTTTGTAGTACTTTTGTCATCTTTAAATTTGTTTCATTATATTGGGTATTTT
CAAATAAGTTATCTCGAAAGTTTGTAAGATAGTATATGTTGAATCTTAATTGGATGACTG
ACATATATATTAGAGACACCTCACAATAAAGTTTTAGTTTTTTGTCTTTTGTTTTTTTGG
GTGTAATCCATATATAGGAAACAAATTCACTTGGCATGTTCCATTGTTTTCCGAAAAAGG
T
Primers used for PCR 73xo - LBb3, show primer details
   
Sequence Name 82-K119306-SALK_054203C-73xo
GenBank Accession LN486251 [GenBank]
Sequencing primer gene specific primer, 73xo: 5'-ACTTTAGTGCATACTCAACAGGCG-3'
Sequence (A. th genome BLAST matches underlined)
>82-K119306-SALK_054203C-73xo
TCTCTCATGATCGGCGTCGTCTTTGCTGCACTAACATTTCCCTGTGCACTCACGACATCT
CGTTTAGACCCCACAACTTTCTTATCTGCTATAAACCAGCCCCAAANCTCTTTTTTAGTT
ACAAAAAAAAAAAAAAAAAAACCCCCTTTTTAAAAATTTTTCAAAACCCCCTTAAATAAA
AAAGGGGGGGGGAAATTGGGACCCCCCAAAAAGGTTTCAAATTTTGGAAAAACCCCTTTT
GGAAAGGGGGAAATTAAATTTAAAGGGAAAAACCTGGGGGGGACCCTGTTGGGGGAAAAA
TTTTTAAAAAAATTTTAATTTTGGGGTTTAAAAAAAAAAACCCCCAAAGGAAATTTCCCC
AAAAAAGGGGTGGAAATTTATTTTTCGGGTTTTTTCCCTTTTGAATTTAACCCAACCCCT
TTGGGGTTAAAAAAAACCCAATTTTTTTTTAAAACAGATTTTTTTTTGAAAGGGGGGGAA
ACCAATTCAACGAAAAACCCAAAAAAAGGGGTTTTTATCCCCTTTCCGGGGGGGGGTCAA
AAAAAAAAAAAAACTTTTTTTTTTTTTTTTCCAGGAAAAAAAAACAACCTTCCCGGGGTT
AAAAAAAGGGCGGCCTTTTTGGGGAAATTTTAAAAAAAGGGTTTTCAAACCTTTTTTTTT
TGGGCAAAAATTTTTTTTTTTGCAAATTTTTTTAAAAAAAAACAAGCCCCCCCAAATTTT
TTTTTTTGCCCTTAAAAATTCCCAATTCTTTAATTTCATTGGGGCAAAAT
   
Sequence Name 34-K119305-SALK_054203C-R210
GenBank Accession LN485212 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>34-K119305-SALK_054203C-R210
GTCATTTGTTTCACCACACCACAATTTGTTGTCTCAGTGTCAATTTGTTCAGTTTAAACA
CCACAATAAGTTGTCAAATTATTCCTTCAGTAGTGCACTCAAGGGTAAGTCTCTTCCAAT
CCTTTTGTTTTGTTTAGCTTTTCAGTTTTCATGATTCTCAACTCAAAGATTGAATCTTTT
GAGAATTTTGACCTATATGAATCTAAGTATATGCTAATTTCAATGACTAATCAATAAATC
TGATGGTACGTCGTATAGTATAGAAAAATGTAGCAAAAAAAGACATTTGTGCCAAAATCA
TTACGTTTCGATAACCTTTTCTTGAAATTTGCATCAACAGCTACGTCATTATATTACACT
TGATTAGTTTGTTTATATTCATTGATAACAATAAAAAGAAGCTCTGTTATGATTATGAAC
TACAACAGAGAAAGGATATAATAACCTTTTTGTTTGGTCTTTCGTTTGATTTGCTTACAC
AGCATTGCAAGCAAAATCAGTGTACAAGAAGAATTGGGATTGGTTGAAACCAGAAGGAGT
TGAGCTAAACTCGAAATGGAACGAAGCAGAGAAGTATATATGCAATCCTTTATCTGGTGA
AGTTCCTTTGGAGTGTTTGTCTTCTAAAACCCTAAATTCAAGATCTTTCAGAAACTTATC
CACCAAGCATGCTCCACTCATGATTTTACCTTCTAATTATAATCTCAACATTCCAAGAAC
GGTTAATCCTAAAGTTAGAATCATTCATGAGGATCCTAGATCTCCCGATCCTGTTCTAAT
TCAAGGTGATTAGTAATGATTTCATAAAGGT

Last Updated on 06.12.2018 16:11