Sequences from confirmation amplicon


Confirmation sequences for line SALK_076722 and hit At5g40370 are shown.
Line ID SALK_076722
Locus At5g40370 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:16148498
Primers used for PCR CG97 - R204, show primer details
   
Sequence Name 05-K107313-SALK_076722C-CG97
GenBank Accession LN484391 [GenBank]
Sequencing primer gene specific primer, CG97: 5'-TTTGTTTGTGAATCTTCGAATCTG-3'
Sequence (A. th genome BLAST matches underlined)
>05-K107313-SALK_076722C-CG97
GGATCGATATGTGTGTTTCATCATGGAAATTTTATACGATGAACGATTCATGGATGTATC
TAGACGCTTTTGTGTACCAATGGATGATTTTGAGTTATTTAATTGGTAATTTTTCTGGAA
TTTGCAGCAAGACTTATTGTCCATATTGCGTGAGAGTGAAGGAGCTTTTGCAACAATTGG
GAGCTAAGTTCAAGGCCGTTGAGCTCGACACCGAAAGTAAATTTCGCCGATTTTTTCATC
ATGAATTCGTTTCATTTGCTGTGTTGATAACGTTTTTGGAATGGTATACTTGTTGTTCTA
TTGCTTGTTTACGGTGATTCGAGTTTAGGATTTTGTTTGATCCAAGGATAGTGTTTTGTT
CTGGAAACAAATTGACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTACT
GGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGG
CCCTGAGAGAGTTGCAGCAAGCGGTCCACG
   
Sequence Name 45-K107289-SALK_076722C-R210
GenBank Accession LN485386 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>45-K107289-SALK_076722C-R210
GTGTCTAGCGTCATTTGTTTCCGAACAAACACTATCCTTGGATCAACAAAATCCTAAACT
CGAATCTCCGTAAACAAGCAATAGAACAACAAGTATACCATTCCAAAAACGTTATCAACA
CAGCAAATGAAACGAATTCATGATGAAAAAATCGGCGAAATTTACTTTCGGTGTCGAGCT
CAACGGCCTTGAACTTAGCTCCCAATTGTTGCAAAAGCTCCTTCACTCTCACGCAATATG
GACAATAAGTCTTGCTGCAAATTCCAGAAAAATTACCAATTAAATAACTCAAAATCATCC
ATTGGTACACAAAAGCGTCTAGATACATCCATGAATCGTTCATCGTATAAAATTTCCATG
ATGAAACACACATAATCGAATCCATATAAAGAAGCCAAAAACACAGATTCGAAGATTCAC
AAACAA
Primers used for PCR CG98 - LBb3, show primer details
   
Sequence Name 79-K119304-SALK_076722C-CG98
GenBank Accession LN486216 [GenBank]
Sequencing primer gene specific primer, CG98: 5'-GAATTTGGCTACCATCACCTGTAT-3'
Sequence (A. th genome BLAST matches underlined)
>79-K119304-SALK_076722C-CG98
CAGACAATGCTTGAGTCTGGATTTTATCTACAACTCTGAATAAATGCAAAAACTCATATA
CTTGGATCAATAACTGCTTAGGGTAATGATCATATGCTTTCTGAAACTTTTTGACTTGTG
GAAGATAAAACCACATGATCATGAGGCCCTATAGAAAACAAAGAAATTTTCAACTATGTG
TTGACAAACAAATCCTACGCTTGGACCAAAAAAATCTACACATGGAACTCCAGCGAACTT
TCTACAAAACGAAACCTTTACTTGGATCAATAAACAAAATCCAAACCTCGATACACAAGT
AAGAGAACAATTCAAAGTTTCCAAAACAAATTGACGCTTAGACAACTTAATAACACATTG
CGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTG
ATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCC
CAGCAGGCGAAAATCCTGTTTGATGGTGGTTCCGAAATCGGCAAAA
   
Sequence Name 31-K119303-SALK_076722C-R210
GenBank Accession LN485159 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>31-K119303-SALK_076722C-R210
GTCATTTGTTTTGGAACTTTGAATTGTTCTCTTACTTGTGTATCGAGGTTTGGATTTTGT
TTATTGATCCAAGTAAAGGTTTCGTTTTGTAGAAAGTTCGCTGGAGTTCCATGTGTAGAT
TTTTTTGGTCCAAGCGTAGGATTTGTTTGTCAACACATAGTTGAAAATTTCTTTGTTTTC
TATAGGGCCTCATGATCATGTGGTTTTATCTTCCACAAGTCAAAAAGTTTCAGAAAGCAT
ATGATCATTACCCTAAGCAGTTATTGATCCAAGTATATGAGTTTTTGCATTTATTCAGAG
TTGTAGATAAAATCCAGACTCAAGCATTGTTCTGCTATTTTTGAATAATTAAATGGTGTT
GTTTAATACAGGTGATGGTAGCCAAATT

Last Updated on 06.12.2018 16:11