Sequences from confirmation amplicon


Confirmation sequences for line SALK_093721 and hit At3g52700 are shown.
Line ID SALK_093721
Locus At3g52700 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr3:19535480
Primers used for PCR 12bb - LBb3, show primer details
   
Sequence Name 47-K107479-SALK_093721C-12bb
GenBank Accession LN485431 [GenBank]
Sequencing primer gene specific primer, 12bb: 5'-AGGACAAAAAGCGAAACTAATTCA-3'
Sequence (A. th genome BLAST matches underlined)
>47-K107479-SALK_093721C-12bb
AGAGAAAACGCACCAAAAGCTATATAATAAAACGGTGAAAGTGGTTGAGACGTAAGAAAT
CAATCCAAAAGCGTCCGCGTTTTTCTATCTGTGCCGTGTTCCTAACTCCGTTAAACCACT
CGCCATGTCATCACAACGACTTTTCAAATATACACACGCTTCTGGGCCCCATATAGCCAA
CTAACCAATCACGATCCTTGTTTTTTCTCGGGACTGGACCCCACCACTCACAGTAAAACG
CCGTACGTCACGCCACGTCAAACTTCAACCAACAAATCCGGTCTTGTGGTGTAAACAAAT
TGTGGTGTAAACAAATTAACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATG
TACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGC
CTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAATC
CTGTTTGATGGTGGTTCCGAAATGNGCAAAA
   
Sequence Name 63-K107480-SALK_093721C-LBb3
GenBank Accession LN485813 [GenBank]
Sequencing primer T-DNA primer, LBb3: 5'-ATTTTGCCGATTTCGGAAC-3'
Sequence (A. th genome BLAST matches underlined)
>63-K107480-SALK_093721C-LBb3
GGGCAACAGCGTGGACCGCTTGCTGCACTCTCTCAGGGCCAGGCGGTGAAGGGCAATCAG
CTGTTGCCCGTCTCACTGGTGAAAAGAAAAACCACCCCAGTACATTAAAAACGTCCGCAA
TGTGTTATTAAGTTGTCTAAGCGTTAATTTGTTTACACCACAATTTGTTTACACCACAAG
ACCGGATTTGTTGGTTGAAGTTTGACGTGGCGTGACGTACGGCGTTTTACTGTGAGTGGT
GGGGTCCAGTCCCGAGAAAAAACAAGGATCGTGATTGGTTAGTTGGCTATATGGGGCCCA
GAAGCGTGTGTATATTTGAAAAGTCGTTGTGATGACATGGCGAGTGGTTTAACGGAGTTA
GGAACACGGCACAGATAGAAAAACGCGGACGCTTTTGGATTGATTTCTTACGTCTCAACC
ACTTTCACCGTTTTATTATATAGCTTTTGGTGCGTTTTTTCTTCTTTTTAAGACTTTTGA
TATTTGAATTAGTTTCGCTTTTTGTCC
Primers used for PCR 04tj - LBb3, show primer details
   
Sequence Name 34-K116652-SALK_093721C-04tj
GenBank Accession LN485206 [GenBank]
Sequencing primer gene specific primer, 04tj: 5'-AGGACAAAAAGCGAAACTAATTCA-3'
Sequence (A. th genome BLAST matches underlined)
>34-K116652-SALK_093721C-04tj
CGCACCAAAAGCTATATAATAAAACGGTGAAAGTGGTTGAGACGTAAGAAATCAATCCAA
AAGCGTCCGCGTTTTTCTATCTGTGCCGTGTTCCTAACTCCGTTAAACCACTCGCCATGT
CATCACAACGACTTTTCAAATATACACACGCTTCTGGGCCCCATATAGCCAACTAACCAA
TCACGATCCTTGTTTTTTCTCGGGACTGGACCCCACCACTCACAGTAAAACGCCGTACGT
CACGCCACGTCAAACTTCAACCAACAAATCCGGTCTTGTGGTGTAAACAAATTGTGGTGT
AAACAAATTAACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTACTGGGG
TGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCT
GAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAATCCTGTTTGA
TGGTGGTTCCAAAAAGGGCAAAA
   
Sequence Name 09-K116651-SALK_093721C-R210
GenBank Accession LN484529 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>09-K116651-SALK_093721C-R210
AATTTGTTTACACCACAAGACCGGATTTGTTGGTTGAAGTTTGACGTGGCGTGACGTACG
GCGTTTTACTGTGAGTGGTGGGGTCCAGTCCCGAGAAAAAACAAGGATCGTGATTGGTTA
GTTGGCTATATGGGGCCCAGAAGCGTGTGTATATTTGAAAAGTCGTTGTGATGACATGGC
GAGTGGTTTAACGGAGTTAGGAACACGGCACAGATAGAAAAACGCGGACGCTTTTGGATT
GATTTCTTACGTCTCAACCACTTTCACCGTTTTATTATATAGCTTTTGGTGCGTTTTTTC
TTCTTTTTAAGACTTTTGATATTTGAATTAGTTTCCTTTTTTGTCCT

Last Updated on 06.12.2018 16:11