Sequences from confirmation amplicon


Confirmation sequences for line SALK_096866 and hit At1g35680 are shown.
Line ID SALK_096866
Locus At1g35680 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:13209064
Primers used for PCR CG27 - R204, show primer details
   
Sequence Name 53-K106282-SALK_096866C-R210
GenBank Accession LN485570 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>53-K106282-SALK_096866C-R210
GCGTCATTTGTTCATCAGCTTGTTGAATCATACGAAACAACAAATTCTCAATTTCGGTGT
TTAGCTTTTGGAATTCGGAATTAGGTTTGGTTGATTGATGAATTTGATTTTAGAGTTTTG
ATAATGAGAGACTGTGTTTTTGTGGTATCTACTCTTAAGATTTAGGGTTTAGGTTTAACG
AATGTTGACTTCTTAAGGGAGAGATTGTGTTTTTGTGGCATATACTCTTCAAGGTTTAGA
GTTTGGCTTTGTTATAATTGATTTTGTTTCTCTCATTTGCAATCTCTGATTTAGCTTAGT
GTTGTTCTCTTTGGTTTGAATAGGTTGGTGGACGCCAATACATAGTGTTTCCAGGGAGAT
ATCTCTACACTCAGAGGCTAAAAGATGCAAATGTTGATGACCAGGTATATGCACATTTG
   
Sequence Name 69-K106283-SALK_096866C-CG27
GenBank Accession LN485969 [GenBank]
Sequencing primer gene specific primer, CG27: 5'-CAAATGTGCATATACCTGGTCATC-3'
Sequence (A. th genome BLAST matches underlined)
>69-K106283-SALK_096866C-CG27
GATATCTCCCTGGAAAACTATGTATTGGCGTCCACCAACCTATTCAAACCAAAGAGAACA
ACACTAAGCTAAATCAGAGATTGCAAATGAGAGAAACAAAATCAATTATAACAAAGCCAA
ACTCTAAACCTTGAAGAGTATATGCCACAAAAACACAATCTCTCCCTTAAGAAGTCAACA
TTCGTTAAACCTAAACCCTAAATCTTAAGAGTAGATACCACAAAAACACAGTCTCTCATT
ATCAAAACTCTAAAATCAAATTCATCAATCAACCAAACCTAATTCCGAATTCCAAAAGCT
AAACACCGAAATTGAGAATTTGTTGTTTCGTATGATTCAACAAGCTGATTGAACAAATTG
ACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCT
TTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTG
CAGCAAGGGNTCCCACG
Primers used for PCR CG28 - LBb3, show primer details
   
Sequence Name 81-K121396-SALK_096866C-CG28
GenBank Accession queueing for submission to ENA/GenBank
Sequencing primer gene specific primer, CG28: 5'-GATAACACTGCGGATTTATTCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>81-K121396-SALK_096866C-CG28
CTCAGTCGAAACAATGGCGTCTTCTTCAGCGACGCTCTCTCTCTGCTCTACTTTCTCTGC
TCATTGCAATGTCAATTCTCGCCGTTCTAGCACTATCCTCTGTTCTCTCTCTAAACCTTC
GCTTAATTTGGCTAAACCTCTGACTGGATTTCTTTCTCCTTCCACTGCGTCGACGTCTCG
AACCGCATTCACCGTCGCTCCGAAATTCGCGGAATCAGTCGTCGAAGCTGAACCGGAGAC
TACCGATATCGAAGCTGTGGTGGTTTCCGATGTTTCGGAGGTTACTGAGGAAAAAGCTAA
ACGAGAAGAGATTTTCGCTGTTATTATGGTGTAAACAAATTGACGCTTAGACAACTTAAT
AACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGG
CAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCT
GGTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGTGGTTCCGAATCGGGCAAAA
   
Sequence Name 43-K121395w-SALK_096866C-R210
GenBank Accession queueing for submission to ENA/GenBank
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>43-K121395w-SALK_096866C-R210
TTTAGCTTTTTTCTCAGTAACCTCCGAAACATCGGAAACCACCACAGCTTCGATATCGGT
AGTCTCCGGTTCAGCTTCGACGACTGATTCCGCGAATTTCGGAGCGACGGTGAATGCGGT
TCGAGACGTCGACGCAGTGGAAGGAGAAAGAAATCCAGTCAGAGGTTTAGCCAAATTAAG
CGAAGGTTTAGAGAGAGAACAGAGGATAGTGCTAGAACGGCGAGAATTGACATTGCAATG
AGCAGAGAAAGTAGAGCAGAGAGAGAGCGTCGCTGAAGAAGACGCCATTGTTTTCGACTG
AGAGAGAGCTCTAAGCTCGAGACTTTGGAGCTCGACGGAGA

Last Updated on 06.12.2018 16:11