Sequences from confirmation amplicon


Confirmation sequences for line SALK_102165c and hit At5g15140 are shown.
Line ID SALK_102165c
Locus At5g15140 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr:
Primers used for PCR CE81 - LBb3, show primer details
   
Sequence Name 23-K117143-SALK_102165C-R210
GenBank Accession LN484956 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>23-K117143-SALK_102165C-R210
TTACGTCAGATCGAATATTCACGTTAGGTTCATATAATTTGATAATTTAAGCATTGTTAC
AAAATATTACAATGTATTTAGTTTCTTGTTCATGAACATTGGACATGGTTCCAAGGGTGT
TCATGTAACAACATCTAAAACAATCTATGAAACAATAGAAAACTTGAAGAGCATAGTGTG
TTTGTATTTTTTCCCTGGCTCGACAATCTGTGAAGGAAATTTGGGATGGTTCAATGCGTC
TGGATAACTTTGTGTTTCTAAACATAATCCCCCGAAAGCTTGGTAAACTGCCCCATTCTT
CCCTTTGACATCCTTTAACATCCCTCCGGTATAGAATTGCAAACCCGCTTGGTTTCCGGA
TAACTCCATTTTCCTCCCTGATTTCTTATCTACGAGTTCAACTATTTTTCTCATCTTTTT
TGCCTTACCATCTAAGCAATAATTTATATCATATCTGCAAGATAAAAAATGAAACAATCA
TATAGGTTACTGTTCATACTAAAACTGATATTTTAGCAAAGTATATATATGTGCTACCAC
TCACCCTGTTTTAAGATCCTTCATATTATCTTTAATAGGACGGAGTTGGAGA
   
Sequence Name 26-K117144-SALK_102165C-CE81
GenBank Accession LN485041 [GenBank]
Sequencing primer gene specific primer, CE81: 5'-TCTCCAACTCCGTCCTATTAAAGA-3'
Sequence (A. th genome BLAST matches underlined)
>26-K117144-SALK_102165C-CE81
TATATATACTTTGCTAAATATCAGTTTTAGTATGAACAGTAACCTATATGATTGTTTCAT
TTTTTATCTTGCAGATATGATATAAATTATTGCTTAGATGGTAAGGCAAAAAAGATGAGA
AAAATAGTTGAACTCGTAGATAAGAAATCAGGGAGGAAAATGGAGTTATCCGGAAACCAA
GCGGGTTTGCAATTCTATACCGGAGGGATGTTAAAGGATGTCAAAGGGAAGAATGGGGCA
GTTTACCAAGCTTTCGGGGGATTATGTTTAGAAACACAAAGTTATCCAGACGCATTGAAC
CATCCCAAATTTCCTTCACAGATTGTCGAGCCAGGGAAAAAATACAAACACACTATGCTC
TTCAAGTTTTCTATTGTTTCATAGATTGTTTTAGATGTTGTTACATGAACACCCTTGGAA
CCATGTCCAATGTTCATGAACAAGAAACTAAATACATTGTAATATTTTGTAACAATGCTT
AAATTATCAAATTATATGAACCTAACGTGAATATTCGATCTGTACGTAATTTATGCATAA
CTCATAAGTTTTTAATAACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTT
TCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCA
GCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGTGGTTCCGA
Primers used for PCR 86vi - LBb3, show primer details
   
Sequence Name 82-K117830-SALK_102165C-86vi
GenBank Accession LN486247 [GenBank]
Sequencing primer gene specific primer, 86vi: 5'-AGTTATTGGAATCTTGGTGGTCAT-3'
Sequence (A. th genome BLAST matches underlined)
>82-K117830-SALK_102165C-86vi
ATCCTCGGCTCGGGTTATACCCCCGTCGACGGTGAGCTCATTCCCACCGGGAAAATCAAT
CCGGTGAAAGGAACAGCATACGATTTTCTCCAACTCCGTCCTATTAAAGATAATATGAAG
GATCTTAAAACAGGGTGAGTGGTAGCACATATATATACTTTGCTAAAATATCAGTTTTAG
TATGAACAGTAACCTATATGATTGTTTCATTTTTTATCTTGCAGATATGATATAAATTAT
TGCTTAGATGGTAAGGCAAAAAAGATGAGAAAAATAGTTGAACTCGTAGATAAGAAATCA
GGGAGGAAAATGGAGTTATCCGGAAACCAAGCGGGTTTGCAATTCTATACCGGAGGGATG
TTAAAGGATGTCAAAGGGAAGAATGGGGCAGTTTACCAAGCTTTCGGGGGATTATGTTTA
GAAACACAAAGTTATCCAGACGCATTGAACCATCCCAAATTTCCTTCACAGATTGTCGAG
CCAGGGAAAAAATACAAACACACTATGCTCTTCAAGTTTTCTATTGTTTCATAGATTGTT
TTAGATGTTGTTACATGAACACCCTTGGAACCATGTCCAATGTTCATGAACAAGAAACTA
AATACATTGTAATATTTTGTAACAATGCTTAAATTATCAAATTATATGAACCTAACGTGA
ATATTCGATCTGTACGTAATTTATGCATAACTCATAAGTTTTTAATAACACATTGCGGAC
GTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGC
CCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCA
GGCGAAAATCCTGTTTGATGGTGGTTCCG
   
Sequence Name 65-K117829-SALK_102165C-R210
GenBank Accession LN485883 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>65-K117829-SALK_102165C-R210
ATTACGTACAGATCGAATATTCACGTTAGGTTCATATAATTTGATAATTTAAGCATTGTT
ACAAAATATTACAATGTATTTAGTTTCTTGTTCATGAACATTGGACATGGTTCCAAGGGT
GTTCATGTAACAACATCTAAAACAATCTATGAAACAATAGAAAACTTGAAGAGCATAGTG
TGTTTGTATTTTTTCCCTGGCTCGACAATCTGTGAAGGAAATTTGGGATGGTTCAATGCG
TCTGGATAACTTTGTGTTTCTAAACATAATCCCCCGAAAGCTTGGTAAACTGCCCCATTC
TTCCCTTTGACATCCTTTAACATCCCTCCGGTATAGAATTGCAAACCCGCTTGGTTTCCG
GATAACTCCATTTTCCTCCCTGATTTCTTATCTACGAGTTCAACTATTTTTCTCATCTTT
TTTGCCTTACCATCTAAGCAATAATTTATATCATATCTGCAAGATAAAAAATGAAACAAT
CATATAGGTTACTGTTCATACTAAAACTGATATTTTAGCAAAGTATATATATGTGCTACC
ACTCACCCTGTTTTAAGATCCTTCATATTATCTTTAATAGGACGGAGTTGGAGAAAATCG
TATGCTGTTCCTTTCACCGGATTGATTTTCCCGGTGGGAATGAGCTCACCGTCGACGGGG
GTATAACCCGAGCCGAGGATTTGAATTTCTTCAGACAAAATATCTCCGGAATTATGACCA
CCAAGATCCCCCATAACT
Primers used for PCR 24xb - LBb3, show primer details
   
Sequence Name 28-K118859-SALK_102165C-24xb
GenBank Accession LN485097 [GenBank]
Sequencing primer gene specific primer, 24xb: 5'-AAGACAATGAATTGAGTGTGGTGA-3'
Sequence (A. th genome BLAST matches underlined)
>28-K118859-SALK_102165C-24xb
GCACTCCGGTGACTTAGCTCATCATAGTTATTGGAATCTTGGTGGTCATAATTCCGGAGA
TATTTTGTCTGAAGAAATTCAAATCCTCGGCTCGGGTTATACCCCCGTCGACGGTGAGCT
CATTCCCACCGGGAAAATCAATCCGGTGAAAGGAACAGCATACGATTTTCTCCAACTCCG
TCCTATTAAAGATAATATGAAGGATCTTAAAACAGGGTGAGTGGTAGCACATATATATAC
TTTGCTAAAATATCAGTTTTAGTATGAACAGTAACCTATATGATTGTTTCATTTTTTATC
TTGCAGATATGATATAAATTATTGCTTAGATGGTAAGGCAAAAAAGATGAGAAAAATAGT
TGAACTCGTAGATAAGAAATCAGGGAGGAAAATGGAGTTATCCGGAAACCAAGCGGGTTT
GCAATTCTATACCGGAGGGATGTTAAAGGATGTCAAAGGGAAGAATGGGGCAGTTTACCA
AGCTTTCGGGGGATTATGTTTAGAAACACAAAGTTATCCAGACGCATTGAACCATCCCAA
ATTTCCTTCACAGATTGTCGAGCCAGGGAAAAAATACAAACACACTATGCTCTTCAAGTT
TTCTATTGTTTCATAGATTGTTTTAGATGTTGTTACATGAACACCCTTGGAACCATGTCC
AATGTTCATGAACAAGAAACTAAATACATTGTAATATTTTGTAACAATGCTTAAATTATC
AAATTATATGAACCTAACGTGAATATTCGATCTGTACGTAATTTATGCATAACTCATAAG
TTTTTAATAACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGT
GAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGG
TCCACGCTGGTTTGCCCCAGCAAGCGAAATCCTGTTTGA
   
Sequence Name 04-K118858-SALK_102165C-R210
GenBank Accession LN484387 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>04-K118858-SALK_102165C-R210
ATTACGTCAGATCGAATATTCACGTTAGGTTCATATAATTTGATAATTTAAGCATTGTTA
CAAAATATTACAATGTATTTAGTTTCTTGTTCATGAACATTGGACATGGTTCCAAGGGTG
TTCATGTAACAACATCTAAAACAATCTATGAAACAATAGAAAACTTGAAGAGCATAGTGT
GTTTGTATTTTTTCCCTGGCTCGACAATCTGTGAAGGAAATTTGGGATGGTTCAATGCGT
CTGGATAACTTTGTGTTTCTAAACATAATCCCCCGAAAGCTTGGTAAACTGCCCCATTCT
TCCCTTTGACATCCTTTAACATCCCTCCGGTATAGAATTGCAAACCCGCTTGGTTTCCGG
ATAACTCCATTTTCCTCCCTGATTTCTTATCTACGAGTTCAACTATTTTTCTCATCTTTT
TTGCCTTACCATCTAAGCAATAATTTATATCATATCTGCAAGATAAAAAATGAAACAATC
ATATAGGTTACTGTTCATACTAAAACTGATATTTTAGCAAAGTATATATATGTGCTACCA
CTCACCCTGTTTTAAGATCCTTCATATTATCTTTAATAGGACGGAGTTGGAGAAAATCGT
ATGCTGTTCCTTTCACCGGATTGATTTTCCCGGTGGGAATGAGCTCACCGTCGACGGGGG
TATAACCCGAGCCGAGGATTTGAATTTCTTCAGACAAAATATCTCCGGAATTATGACCAC
CAAGATTCCAATAACTATGATGAGCTAAGTTCACCGGAGTTGCTTTATCCTTAGGCTTTG
CCTCCATCACCACACTC
Primers used for PCR 04xg - LBb3, show primer details
   
Sequence Name 25-K119050-SALK_102165C-04xg
GenBank Accession LN485019 [GenBank]
Sequencing primer gene specific primer, 04xg: 5'-AAGGAAGAATCTAACGATTACTAGTCC-3'
Sequence (A. th genome BLAST matches underlined)
>25-K119050-SALK_102165C-04xg
GTTTCCGGGAACTCAGTGTCACGGTGACATATAAACTTGTCAAAGACAATGAATTGAGTG
TGGTGATGGAGGCAAAGCCTAAGGATAAAGCAACTCCGGTGAACTTAGCTCATCATAGTT
ATTGGAATCTTGGTGGTCATAATTCCGGAGATATTTTGTCTGAAGAAATTCAAATCCTCG
GCTCGGGTTATACCCCCGTCGACGGTGAGCTCATTCCCACCGGGAAAATCAATCCGGTGA
AAGGAACAGCATACGATTTTCTCCAACTCCGTCCTATTAAAGATAATATGAAGGATCTTA
AAACAGGGTGAGTGGTAGCACATATATATACTTTGCTAAAATATCAGTTTTAGTATGAAC
AGTAACCTATATGATTGTTTCATTTTTTATCTTGCAGATATGATATAAATTATTGCTTAG
ATGGTAAGGCAAAAAAGATGAGAAAAATAGTTGAACTCGTAGATAAGAAATCAGGGAGGA
AAATGGAGTTATCCGGAAACCAAGCGGGTTTGCAATTCTATACCGGAGGGATGTTAAAGG
ATGTCAAAGGGAAGAATGGGGCAGTTTACCAAGCTTTCGGGGGATTATGTTTAGAAACAC
AAAGTTATCCAGACGCATTGAACCATCCCAAATTTCCTTCACAGATTGTCGAGCCAGGGA
AAAAATACAAACACACTATGCTCTTCAAGTTTTCTATTGTTTCATAGATTGTTTTAGATG
TTGTTACATGAACACCCTTGGAACCATGTCCAATGTTCATGAACAAGAAACTAAATACAT
TGTAATATTTTGTAACAATGCTTTAATTATCAAATTATATGAACCTAACGTGAATATTCG
ATCTGTACGTAATTTATGCATAACT
   
Sequence Name 09-K119049-SALK_102165C-R210
GenBank Accession LN484538 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>09-K119049-SALK_102165C-R210
ATTACGTCAGATCGAATATTCACGTTAGGTTCATATAATTTGATAATTTAAGCATTGTTA
CAAAATATTACAATGTATTTAGTTTCTTGTTCATGAACATTGGACATGGTTCCAAGGGTG
TTCATGTAACAACATCTAAAACAATCTATGAAACAATAGAAAACTTGAAGAGCATAGTGT
GTTTGTATTTTTTCCCTGGCTCGACAATCTGTGAAGGAAATTTGGGATGGTTCAATGCGT
CTGGATAACTTTGTGTTTCTAAACATAATCCCCCGAAAGCTTGGTAAACTGCCCCATTCT
TCCCTTTGACATCCTTTAACATCCCTCCGGTATAGAATTGCAAACCCGCTTGGTTTCCGG
ATAACTCCATTTTCCTCCCTGATTTCTTATCTACGAGTTCAACTATTTTTCTCATCTTTT
TTGCCTTACCATCTAAGCAATAATTTATATCATATCTGCAAGATAAAAAATGAAACAATC
ATATAGGTTACTGTTCATACTAAAACTGATATTTTAGCAAAGTATATATATGTGCTACCA
CTCACCCTGTTTTAAGATCCTTCATATTATCTTTAATAGGACGGAGTTGGAGAAAATCGT
ATGCTGTTCCTTTCACCGGATTGATTTTCCCGGTGGGAATGAGCTCACCGTCGACGGGGG
TATAACCCGAGCCGAGGATTTGAATTTCTTCAGACAAAATATCTCCGGAATTATGACCAC
CAAGATTCCAATAACTATGATGAGCTAAGTTCACCGGAGTTGCTTTATCCTTAGGCTTTG
CCTCCATCACCACACTCAATTCATTGTCTTTGACAAGTTTATATGTCACGGTGACACTGA
GTTCTCCCGGAAAACCTATTGATATATAAAA

Last Updated on 06.12.2018 16:11