Sequences from confirmation amplicon
Confirmation sequences for line SALK_102165c and hit At5g15140 are shown.
Primers used for PCR |
CE81 - LBb3, show primer details |
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Sequence Name |
23-K117143-SALK_102165C-R210 |
GenBank Accession |
LN484956 [GenBank] |
Sequencing primer
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T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3' |
Sequence (A. th genome BLAST matches underlined)
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>23-K117143-SALK_102165C-R210
TTACGTCAGATCGAATATTCACGTTAGGTTCATATAATTTGATAATTTAAGCATTGTTAC
AAAATATTACAATGTATTTAGTTTCTTGTTCATGAACATTGGACATGGTTCCAAGGGTGT
TCATGTAACAACATCTAAAACAATCTATGAAACAATAGAAAACTTGAAGAGCATAGTGTG
TTTGTATTTTTTCCCTGGCTCGACAATCTGTGAAGGAAATTTGGGATGGTTCAATGCGTC
TGGATAACTTTGTGTTTCTAAACATAATCCCCCGAAAGCTTGGTAAACTGCCCCATTCTT
CCCTTTGACATCCTTTAACATCCCTCCGGTATAGAATTGCAAACCCGCTTGGTTTCCGGA
TAACTCCATTTTCCTCCCTGATTTCTTATCTACGAGTTCAACTATTTTTCTCATCTTTTT
TGCCTTACCATCTAAGCAATAATTTATATCATATCTGCAAGATAAAAAATGAAACAATCA
TATAGGTTACTGTTCATACTAAAACTGATATTTTAGCAAAGTATATATATGTGCTACCAC
TCACCCTGTTTTAAGATCCTTCATATTATCTTTAATAGGACGGAGTTGGAGA
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Sequence Name |
26-K117144-SALK_102165C-CE81 |
GenBank Accession |
LN485041 [GenBank] |
Sequencing primer
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gene specific primer, CE81: 5'-TCTCCAACTCCGTCCTATTAAAGA-3' |
Sequence (A. th genome BLAST matches underlined)
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>26-K117144-SALK_102165C-CE81
TATATATACTTTGCTAAATATCAGTTTTAGTATGAACAGTAACCTATATGATTGTTTCAT
TTTTTATCTTGCAGATATGATATAAATTATTGCTTAGATGGTAAGGCAAAAAAGATGAGA
AAAATAGTTGAACTCGTAGATAAGAAATCAGGGAGGAAAATGGAGTTATCCGGAAACCAA
GCGGGTTTGCAATTCTATACCGGAGGGATGTTAAAGGATGTCAAAGGGAAGAATGGGGCA
GTTTACCAAGCTTTCGGGGGATTATGTTTAGAAACACAAAGTTATCCAGACGCATTGAAC
CATCCCAAATTTCCTTCACAGATTGTCGAGCCAGGGAAAAAATACAAACACACTATGCTC
TTCAAGTTTTCTATTGTTTCATAGATTGTTTTAGATGTTGTTACATGAACACCCTTGGAA
CCATGTCCAATGTTCATGAACAAGAAACTAAATACATTGTAATATTTTGTAACAATGCTT
AAATTATCAAATTATATGAACCTAACGTGAATATTCGATCTGTACGTAATTTATGCATAA
CTCATAAGTTTTTAATAACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTT
TCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCA
GCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGTGGTTCCGA
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Primers used for PCR |
86vi - LBb3, show primer details |
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Sequence Name |
82-K117830-SALK_102165C-86vi |
GenBank Accession |
LN486247 [GenBank] |
Sequencing primer
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gene specific primer, 86vi: 5'-AGTTATTGGAATCTTGGTGGTCAT-3' |
Sequence (A. th genome BLAST matches underlined)
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>82-K117830-SALK_102165C-86vi
ATCCTCGGCTCGGGTTATACCCCCGTCGACGGTGAGCTCATTCCCACCGGGAAAATCAAT
CCGGTGAAAGGAACAGCATACGATTTTCTCCAACTCCGTCCTATTAAAGATAATATGAAG
GATCTTAAAACAGGGTGAGTGGTAGCACATATATATACTTTGCTAAAATATCAGTTTTAG
TATGAACAGTAACCTATATGATTGTTTCATTTTTTATCTTGCAGATATGATATAAATTAT
TGCTTAGATGGTAAGGCAAAAAAGATGAGAAAAATAGTTGAACTCGTAGATAAGAAATCA
GGGAGGAAAATGGAGTTATCCGGAAACCAAGCGGGTTTGCAATTCTATACCGGAGGGATG
TTAAAGGATGTCAAAGGGAAGAATGGGGCAGTTTACCAAGCTTTCGGGGGATTATGTTTA
GAAACACAAAGTTATCCAGACGCATTGAACCATCCCAAATTTCCTTCACAGATTGTCGAG
CCAGGGAAAAAATACAAACACACTATGCTCTTCAAGTTTTCTATTGTTTCATAGATTGTT
TTAGATGTTGTTACATGAACACCCTTGGAACCATGTCCAATGTTCATGAACAAGAAACTA
AATACATTGTAATATTTTGTAACAATGCTTAAATTATCAAATTATATGAACCTAACGTGA
ATATTCGATCTGTACGTAATTTATGCATAACTCATAAGTTTTTAATAACACATTGCGGAC
GTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGC
CCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCA
GGCGAAAATCCTGTTTGATGGTGGTTCCG
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Sequence Name |
65-K117829-SALK_102165C-R210 |
GenBank Accession |
LN485883 [GenBank] |
Sequencing primer
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T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3' |
Sequence (A. th genome BLAST matches underlined)
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>65-K117829-SALK_102165C-R210
ATTACGTACAGATCGAATATTCACGTTAGGTTCATATAATTTGATAATTTAAGCATTGTT
ACAAAATATTACAATGTATTTAGTTTCTTGTTCATGAACATTGGACATGGTTCCAAGGGT
GTTCATGTAACAACATCTAAAACAATCTATGAAACAATAGAAAACTTGAAGAGCATAGTG
TGTTTGTATTTTTTCCCTGGCTCGACAATCTGTGAAGGAAATTTGGGATGGTTCAATGCG
TCTGGATAACTTTGTGTTTCTAAACATAATCCCCCGAAAGCTTGGTAAACTGCCCCATTC
TTCCCTTTGACATCCTTTAACATCCCTCCGGTATAGAATTGCAAACCCGCTTGGTTTCCG
GATAACTCCATTTTCCTCCCTGATTTCTTATCTACGAGTTCAACTATTTTTCTCATCTTT
TTTGCCTTACCATCTAAGCAATAATTTATATCATATCTGCAAGATAAAAAATGAAACAAT
CATATAGGTTACTGTTCATACTAAAACTGATATTTTAGCAAAGTATATATATGTGCTACC
ACTCACCCTGTTTTAAGATCCTTCATATTATCTTTAATAGGACGGAGTTGGAGAAAATCG
TATGCTGTTCCTTTCACCGGATTGATTTTCCCGGTGGGAATGAGCTCACCGTCGACGGGG
GTATAACCCGAGCCGAGGATTTGAATTTCTTCAGACAAAATATCTCCGGAATTATGACCA
CCAAGATCCCCCATAACT
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Primers used for PCR |
24xb - LBb3, show primer details |
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Sequence Name |
28-K118859-SALK_102165C-24xb |
GenBank Accession |
LN485097 [GenBank] |
Sequencing primer
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gene specific primer, 24xb: 5'-AAGACAATGAATTGAGTGTGGTGA-3' |
Sequence (A. th genome BLAST matches underlined)
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>28-K118859-SALK_102165C-24xb
GCACTCCGGTGACTTAGCTCATCATAGTTATTGGAATCTTGGTGGTCATAATTCCGGAGA
TATTTTGTCTGAAGAAATTCAAATCCTCGGCTCGGGTTATACCCCCGTCGACGGTGAGCT
CATTCCCACCGGGAAAATCAATCCGGTGAAAGGAACAGCATACGATTTTCTCCAACTCCG
TCCTATTAAAGATAATATGAAGGATCTTAAAACAGGGTGAGTGGTAGCACATATATATAC
TTTGCTAAAATATCAGTTTTAGTATGAACAGTAACCTATATGATTGTTTCATTTTTTATC
TTGCAGATATGATATAAATTATTGCTTAGATGGTAAGGCAAAAAAGATGAGAAAAATAGT
TGAACTCGTAGATAAGAAATCAGGGAGGAAAATGGAGTTATCCGGAAACCAAGCGGGTTT
GCAATTCTATACCGGAGGGATGTTAAAGGATGTCAAAGGGAAGAATGGGGCAGTTTACCA
AGCTTTCGGGGGATTATGTTTAGAAACACAAAGTTATCCAGACGCATTGAACCATCCCAA
ATTTCCTTCACAGATTGTCGAGCCAGGGAAAAAATACAAACACACTATGCTCTTCAAGTT
TTCTATTGTTTCATAGATTGTTTTAGATGTTGTTACATGAACACCCTTGGAACCATGTCC
AATGTTCATGAACAAGAAACTAAATACATTGTAATATTTTGTAACAATGCTTAAATTATC
AAATTATATGAACCTAACGTGAATATTCGATCTGTACGTAATTTATGCATAACTCATAAG
TTTTTAATAACACATTGCGGACGTTTTTAATGTACTGGGGTGGTTTTTCTTTTCACCAGT
GAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGG
TCCACGCTGGTTTGCCCCAGCAAGCGAAATCCTGTTTGA
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Sequence Name |
04-K118858-SALK_102165C-R210 |
GenBank Accession |
LN484387 [GenBank] |
Sequencing primer
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T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3' |
Sequence (A. th genome BLAST matches underlined)
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>04-K118858-SALK_102165C-R210
ATTACGTCAGATCGAATATTCACGTTAGGTTCATATAATTTGATAATTTAAGCATTGTTA
CAAAATATTACAATGTATTTAGTTTCTTGTTCATGAACATTGGACATGGTTCCAAGGGTG
TTCATGTAACAACATCTAAAACAATCTATGAAACAATAGAAAACTTGAAGAGCATAGTGT
GTTTGTATTTTTTCCCTGGCTCGACAATCTGTGAAGGAAATTTGGGATGGTTCAATGCGT
CTGGATAACTTTGTGTTTCTAAACATAATCCCCCGAAAGCTTGGTAAACTGCCCCATTCT
TCCCTTTGACATCCTTTAACATCCCTCCGGTATAGAATTGCAAACCCGCTTGGTTTCCGG
ATAACTCCATTTTCCTCCCTGATTTCTTATCTACGAGTTCAACTATTTTTCTCATCTTTT
TTGCCTTACCATCTAAGCAATAATTTATATCATATCTGCAAGATAAAAAATGAAACAATC
ATATAGGTTACTGTTCATACTAAAACTGATATTTTAGCAAAGTATATATATGTGCTACCA
CTCACCCTGTTTTAAGATCCTTCATATTATCTTTAATAGGACGGAGTTGGAGAAAATCGT
ATGCTGTTCCTTTCACCGGATTGATTTTCCCGGTGGGAATGAGCTCACCGTCGACGGGGG
TATAACCCGAGCCGAGGATTTGAATTTCTTCAGACAAAATATCTCCGGAATTATGACCAC
CAAGATTCCAATAACTATGATGAGCTAAGTTCACCGGAGTTGCTTTATCCTTAGGCTTTG
CCTCCATCACCACACTC
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Primers used for PCR |
04xg - LBb3, show primer details |
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Sequence Name |
25-K119050-SALK_102165C-04xg |
GenBank Accession |
LN485019 [GenBank] |
Sequencing primer
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gene specific primer, 04xg: 5'-AAGGAAGAATCTAACGATTACTAGTCC-3' |
Sequence (A. th genome BLAST matches underlined)
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>25-K119050-SALK_102165C-04xg
GTTTCCGGGAACTCAGTGTCACGGTGACATATAAACTTGTCAAAGACAATGAATTGAGTG
TGGTGATGGAGGCAAAGCCTAAGGATAAAGCAACTCCGGTGAACTTAGCTCATCATAGTT
ATTGGAATCTTGGTGGTCATAATTCCGGAGATATTTTGTCTGAAGAAATTCAAATCCTCG
GCTCGGGTTATACCCCCGTCGACGGTGAGCTCATTCCCACCGGGAAAATCAATCCGGTGA
AAGGAACAGCATACGATTTTCTCCAACTCCGTCCTATTAAAGATAATATGAAGGATCTTA
AAACAGGGTGAGTGGTAGCACATATATATACTTTGCTAAAATATCAGTTTTAGTATGAAC
AGTAACCTATATGATTGTTTCATTTTTTATCTTGCAGATATGATATAAATTATTGCTTAG
ATGGTAAGGCAAAAAAGATGAGAAAAATAGTTGAACTCGTAGATAAGAAATCAGGGAGGA
AAATGGAGTTATCCGGAAACCAAGCGGGTTTGCAATTCTATACCGGAGGGATGTTAAAGG
ATGTCAAAGGGAAGAATGGGGCAGTTTACCAAGCTTTCGGGGGATTATGTTTAGAAACAC
AAAGTTATCCAGACGCATTGAACCATCCCAAATTTCCTTCACAGATTGTCGAGCCAGGGA
AAAAATACAAACACACTATGCTCTTCAAGTTTTCTATTGTTTCATAGATTGTTTTAGATG
TTGTTACATGAACACCCTTGGAACCATGTCCAATGTTCATGAACAAGAAACTAAATACAT
TGTAATATTTTGTAACAATGCTTTAATTATCAAATTATATGAACCTAACGTGAATATTCG
ATCTGTACGTAATTTATGCATAACT
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Sequence Name |
09-K119049-SALK_102165C-R210 |
GenBank Accession |
LN484538 [GenBank] |
Sequencing primer
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T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3' |
Sequence (A. th genome BLAST matches underlined)
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>09-K119049-SALK_102165C-R210
ATTACGTCAGATCGAATATTCACGTTAGGTTCATATAATTTGATAATTTAAGCATTGTTA
CAAAATATTACAATGTATTTAGTTTCTTGTTCATGAACATTGGACATGGTTCCAAGGGTG
TTCATGTAACAACATCTAAAACAATCTATGAAACAATAGAAAACTTGAAGAGCATAGTGT
GTTTGTATTTTTTCCCTGGCTCGACAATCTGTGAAGGAAATTTGGGATGGTTCAATGCGT
CTGGATAACTTTGTGTTTCTAAACATAATCCCCCGAAAGCTTGGTAAACTGCCCCATTCT
TCCCTTTGACATCCTTTAACATCCCTCCGGTATAGAATTGCAAACCCGCTTGGTTTCCGG
ATAACTCCATTTTCCTCCCTGATTTCTTATCTACGAGTTCAACTATTTTTCTCATCTTTT
TTGCCTTACCATCTAAGCAATAATTTATATCATATCTGCAAGATAAAAAATGAAACAATC
ATATAGGTTACTGTTCATACTAAAACTGATATTTTAGCAAAGTATATATATGTGCTACCA
CTCACCCTGTTTTAAGATCCTTCATATTATCTTTAATAGGACGGAGTTGGAGAAAATCGT
ATGCTGTTCCTTTCACCGGATTGATTTTCCCGGTGGGAATGAGCTCACCGTCGACGGGGG
TATAACCCGAGCCGAGGATTTGAATTTCTTCAGACAAAATATCTCCGGAATTATGACCAC
CAAGATTCCAATAACTATGATGAGCTAAGTTCACCGGAGTTGCTTTATCCTTAGGCTTTG
CCTCCATCACCACACTCAATTCATTGTCTTTGACAAGTTTATATGTCACGGTGACACTGA
GTTCTCCCGGAAAACCTATTGATATATAAAA
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Last Updated on 06.12.2018 16:11 |