Sequences from confirmation amplicon


Confirmation sequences for line SALK_118939 and hit At1g69720 are shown.
Line ID SALK_118939
Locus At1g69720 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:26227940
Primers used for PCR BI21 - R212, show primer details
   
Sequence Name 65-K105636-SALK_118939C-BI21
GenBank Accession LN485862 [GenBank]
Sequencing primer gene specific primer, BI21: 5'-AGTAAGTTGGTTTACGACACGCTT-3'
Sequence (A. th genome BLAST matches underlined)
>65-K105636-SALK_118939C-BI21
TGTGAGTTTTTTTTACTTCTTATGAATTGAAGTGTTGTGTTGATTGTGTTTAGATCCTTA
ATAAATGTTTTGGACTTGATTTGCATTCAAATGTCAGACCAATTTTCTAGGATCATATGC
ACACACACATAGAATAAGTTCTTGAAACAGTCTTAGAAAGATTACAGTTTGCAAATGTAG
GTCCTTTTTCTTGTGTAACATTGTCAAAATCTCTGCTTTTGTTGTGTAGATGCTGGTTTC
AAGAACACGGGATTAGAAAGAGCAGAGAGTTTGCGGTCAAACACTGATAGTTTAAACTGA
AGGCGGGAAACGACAATCTGATCATGAGCGGAGAATTAAGGGAGTCACGTTATGACCCCC
GCCGATGACGCGGGACAAGCCGTTTTACGTTTGGAACTGACAGAACCGCAACGTTGAAGG
AGCCACTCAGCCGCGGGTTTCTGGAGTTTAATGAGCTAAGCACATACGTCAGAAACCATT
ATTGCGCGTTCAAAATCGGCCTAAGG
   
Sequence Name 69-K105637-SALK_118939C-R214
GenBank Accession LN485968 [GenBank]
Sequencing primer gene specific primer, R214: 5'-AACGTTGCGGTTCTGTCAGTTCC-3'
Sequence (A. th genome BLAST matches underlined)
>69-K105637-SALK_118939C-R214
GCGGGGGTCATAACGTGACTCCCTTAATTCTCCGCTCATGATCAGATTGTCGTTTCCCGC
CTTCAGTTTAAACTATCAGTGTTTGACCGCAAACTCTCTGCTCTTTCTAATCCCGTGTTC
TTGAAACCAGCATCTACACAACAAAAGCAGAGATTTTGACAATGTTACACAAGAAAAAGG
ACCTACATTTGCAAACTGTAATCTTTCTAAGACTGTTTCAAGAACTTATTCTATGTGTGT
GTGCATATGATCCTAGAAAATTGGTCTGACATTTGAATGCAAATCAAGTCCAAAACATTT
ATTAAGGATCTAAACACAATCAACACAACACTTCAATTCATAAGAAGTAAAAAAAAACTC
ACAAGTTGGGAAATTGGATCCATCAATGATCCCTTCAAGCGTGTCGTAAACCAACTTA
Primers used for PCR 64vr - LBb3, show primer details
   
Sequence Name 79-K118049-SALK_118939C-64vr
GenBank Accession LN486213 [GenBank]
Sequencing primer gene specific primer, 64vr: 5'-TAAGAGATGGTTGCATGTTGAGTC-3'
Sequence (A. th genome BLAST matches underlined)
>79-K118049-SALK_118939C-64vr
AGGAATGTCTCATCTGAAGGGAGAAAACGACCAAGCATGAGAGAAGTGTCGATGGAGCTT
GATAGTATTCGTATGCCTTGTGGAGATATGCAACTGCAAGAATGTGTTAGCGAAAACGAG
GAAGGGGAAGAACAAAACAAAGGACTTGTGGAAGATATCATGAGGGCAGAATCAAGGAGC
AAAGAGTTTGTTACCGCTCCAGCTTCTCACTACAATAATATTGCTGCTGCCTCATCTTCT
TCGTGGTCAGATGTTGAACCATTGTTTCCTCTTCAAACACGGTAAAACTTCATCTTCGAA
CACGACCGTATAATATCTTGTCTTTGCTTTTATATTTGTTTTCGGTGTTTTGCAAGTGTC
TGTAATAAGGAATCTTGTTTGTATCCATTTCCAAACAAAAAAGAAAACACGAAAATAATT
TTATAGTTTGGTTATTATGATATGTTTTACGCATTAATACAATAGTCACATAGTTATTTC
ACATACAAACCTCTTAAATCGTATTGGTTCCACGAAACTAGCAGAAGGCTTTATTGACTA
TTGAAGATCTGAAGGTTTATGAATCAAATCAGGACAATATGAGTCGAAGAATCTCCCCTG
AAAACTTAAACGATTTCTCAGTCTCTTCCAAGCAATGACTCTTTTCTTCTCTTGTCCACC
ACTGCCCATTCAAAATCCACATTAGCCATTAGAATATTCTTCTTTGTTCAATAGAGTAGT
GTAAAGTTCAATACCTCTGCAACTTTGTTCAGTTTTTGCCTCACATTTTGCAACAACTGA
GAAAGTTGACCGTCCCATTTATAGAACTCGAGTTCTTTATTATCTAGTATCTTCTTAGAT
ACCTGCATAACTGATCGTAAACTTTCAGAAAATATTCCAACTTCGATTCCAAATGATATA
GTACCTAAAGTTGTTTTCTTTACCTTTGTTCCAATCATCTGGCCACCGGCGCTATGAGCA
AAGTAATGTTGTAGAAGTGACAAATGATGCTTTGAGATCATCTCTGCTAATCTTTTAATA
CTCAGATATGTTT
   
Sequence Name 73-K118048-SALK_118939C-R210
GenBank Accession LN486091 [GenBank]
Sequencing primer T-DNA primer, R210: 5'-CCCAGTACATTAAAAACGTCCGC-3'
Sequence (A. th genome BLAST matches underlined)
>73-K118048-SALK_118939C-R210
GTCATTTGTTTACCCACAATATATCCTGGTAAAACATATTCTGAGTATTTAAAAGATTTA
GCAGAGAATGATCCTCAAGCATTCATTTGTCACTTCTACAACATTTACTTTGCTCATAGC
GCCGGTGGCCAGATGATTGGAACAAAGGTAAAGAAAACAACTTTAGGTACTATATTCATT
TGGAATCGAAGTTGGAATATTTTCTGAAAGTTTACGATCAGTTATGCAGGTATCTAAGAA
GATACTAGATAATAAAGAACTCGAGTTCTATAAATGGGACGGTCAACTTTCTCAGTTGTT
GCAAAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGGTATTGAACTTTACACTACTCTA
TTGAACAAAGAAGAATATTCTAATGGCTAATGTGGATTTTGAATGGGCAGTGGTGGACAA
GAGAAGAAAAGAGTCATTGCTTGGAAGAGACTGAGAAATCGTTTAAGTTTTCAGGGGAGA
TTCTTCGACTCATATTGTCCTGATTTGATTCATAAACCTTCAGATCTTCAATAGTCAATA
AAGCCTTCTGCTAGTTTCGTGGAACCAATACGATTTAAGAGGTTTGTATGTGAAATAACT
ATGTGACTATTGTATTAATGCGTAAAACATATCATAATAACCAAACTATAAAATTATTTT
CGTGTTTTCTTTTTTGTTTGGAAATGGATACAAACAAGATTCCTTATTACAGACACTTGC
AAAACACCGAAAACAAATATAAAAGCAAAGACAAGATATTATACGGTCGTGTTCGAAGAT
GAAGTTTTACCGTGTTTGAAGAGGAAACAATGGTTCAACATCTGACCACGAAGAAGATGA
GGCAGCAGCAATATTATTGTAGTGAGAAGCTGGAGCGGGTACAAACTCTTTGCTCCTTGA
TTCTGCCCTCATGATATCTTCCACAAGTCCCTTTNGTTTTGTCTCCCC

Last Updated on 06.12.2018 16:11