SimpleSearch - Line and FST details


Line specific information

 
Line ID 479B03
Vector Used pAC161
Line Availability available as T3 set from NASC (N445903)
Segregation Analysis 50:33:27
Confirmed for Hit At5g41400
Parent of DUPLO pair none
Parent of pair(s) 465, 2848

Gene hit FCAALL

 
Sequence (A. th genome BLAST matches underlined) 
>18-K019034-022-479-B03-8409
TATTATAACTCCTTATACCGATTCCACTCCTACCCTCTCCCATACATCTCCTTCCCAATT
TCTCACGCTCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX293460 [GenBank]
Graphic View Graphic view of sequence BX293460 of line 479B03
Predicted Position of Insertion Chr4:9897605 - go to primer design
BLAST e Value 4e-10
Hit Clone Code (BAC ID) FCAALL
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g41400

Sequence (A. th genome BLAST matches underlined) 
>18-K019030-022-479-B03-8409
ACGTGATCTGATTATAACCCATCACCCAACGGACTAATTTGCTCCGGTGAAATATGTGTT
GACAATTCGTCAGCCGTCGGATCTCGTCATCGTTCTCGAACTCGTGGAGGCACACCGCGC
AGCAATCGGATCCGGATCCGAATCCGGGTCGAGTTAGCTCCGAGAATCTGATGACGGGCA
AGATTTCTCCAGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX293459 [GenBank]
Graphic View Graphic view of gene At5g41400
Predicted Position of Insertion Chr5:16569666 - go to primer design
BLAST e Value 7e-92
Hit Clone Code (BAC ID) MYC6
Hit Gene Code At5g41400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details