SimpleSearch - Line and FST details
Line specific information
| Line ID | 001A08 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400008) |
| Segregation Analysis | 50:24:24 |
| Confirmed for Hit | At4g16500 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2082 |
Gene hit At4g16500
| Sequence (A. th genome BLAST matches underlined) | >57-K025788-022-001-A08-8409 CATTTACAATTGAATATATCCTGATAGTTTAAACCGAAGGAGGGAAACGACAATCTGATC CCCGGGTATGGGATCCTCCCTATAGTGAGAAGTTAAATACTTCATCATCATATTTTCGTT TCCTTAACCTTTTTTAATTTTCGTGTGTTTAATGGTCTCTGGTGTTTATTATATAGACAA GACTTGTAGATTTGGTTTTGCTTTGGAATGTGGGCTGATAGTTCCAGAAATTTACGGAGA TCTCAATTGTGTGTTACGCGGTGACGAGTGAATTGTCTTTTTACACCGTCAGATTTGACA ACTGGATAAGTCCACGTGGCGAAAGATAATGTATGGGATCCTCCCTATAGTGAGANNNNN NNTCACTNTATTCCCNAATTATTTAGGTTAATAGATCTTGAATATCTCGGTGGAGAGAGC CTAAATAAACAAAATTGATTAACGCTATGATGTATGAACACCCATTATGTGTTAAATTTT ATAAGAATATTATCATGAATATC |
| GenBank Accession | CR394581 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:9301806 - go to primer design |
| BLAST e Value | 3e-130 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g16500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cystatin/monellin superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T25K16
| Sequence (A. th genome BLAST matches underlined) | >57-K026818-022-001-A08-8409 AGCCATTTACAATTGAATATATCCTGATAGTTTAGACCGAAGGCGGGAAACGACAATCTG ATCCCCGGGTATGGGATCCTCCCTATAGTGAGACGTATTATACTTCCTCTTCGGATTTTC GTTTCATTAACCGTTTTTAATTTTCGTGTGGTTACTGGTCTCTGGTGTTGATTATTAATA CTGGACTTGTATATTTGGTTTTGATGTGGAATGTCGCTTTCTATACCTTAATTTTGGCTA GATCTCGATTGCGGGCTTAACGTTGCCAATTGAATTGCCTTTTTATACCGACGAATATGA TAAATGGATAAATTAGAGTGGATCTATTATCTAAACCCCCAAAAGACAAAAGAAGAAAGT AGAAAGAAAAGGTAGGCAGAGATATAATGCTGGTTTTATTTGTTTGATAAAAGATATTGG TATTTCTGCCAATATTATATTTTCACTTAAGAAGACTTGAACCTACCACACGTTAATAAC TAATGGGAGCCACTAAATAGTTGCATGAGTCCCACCCTAG |
| GenBank Accession | CR394582 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2252 - go to primer design |
| BLAST e Value | 1e-45 |
| Hit Clone Code (BAC ID) | T25K16 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR394582 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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