SimpleSearch - Line and FST details


Line specific information

 
Line ID 076C06
Vector Used pAC161
Line Availability available as T3 set from NASC (N407230)
Segregation Analysis 50:45:31
Confirmed for Hit At5g05540
Parent of DUPLO pair 12269
Parent of pair(s) none
Note

Gene hit At5g05540

 
Sequence (A. th genome BLAST matches underlined) 
>43-011889-strizhov-C6-8409
GTGATCCATGTAGATTNTCCCGGACCATGAAGCCTTTACAATTGAATATATATGGAACAT
TGCAAGGGATTCTATGAAGGTAGAGCTTTGACTTCTCAGCTTCCAACATCTATATGGAAT
TATGCAGACAAAACGTTATGCTTTTATAAGTTTAGATTGAACTAATGAAGTTTGTGCAAT
CCAACTTACCTCTTTAGATAGTGGAACGGAGGTCTCTGCTCCATTATCTATGGGATCCTC
CCTATAGTGAGTCGT
GenBank Accession AL768607 [GenBank]
Graphic View Graphic view of gene At5g05540
Predicted Position of Insertion Chr5:1638202 - go to primer design
BLAST e Value 8e-98
Hit Clone Code (BAC ID) MOP10
Hit Gene Code At5g05540 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation small RNA degrading nuclease 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g28520

 
Sequence (A. th genome BLAST matches underlined) 
>43-011919-strizhov-C6-8409
TTTGATCCATGTAGATTGTCCCGGACATGAANGCCTTTACAATTGAATATATATGGAACA
TTGCAAGGGATTCTATGAAGGTAGAGCTTTGACTTCTCAGCTTCCAACATCTATATGGAA
TTATGCAGACAAAACGTTATGCTTTTATAAGTTTAGATTGAACTAATGAAGTTTGTGCAA
TCCAACTTACCTCTTTAGATAGTGGAACGGAGGTCTCTGCTCCATTACCTATGGGATCCT
CCTATAAGGGAGAANATTACCGACAACCGCATAGGTATATATCCTATGGGATCCTTCTAT
TAGTGAACGCACTCTCTTTTCCTTCTCTCAGAACATGATCAATATAAGTGTTTGTGATTA
TATCTCTGTGATGATTCTCGAAAGTCAGAGTCAAGCACCTTCCCTCCTTCAAAGCATGCT
GATCCTCTTTATCTACCACGGTGGAAGACCATACCACGTTTGCACCTTGGAATACAACTA
CAACTGCCTCGTCGCTGTGCAAACAAAGAACCAACGATTTGCTGTTATCCGATTCTTAGG
CCTTTAATCTCTTGGCCCTATGGGATC
GenBank Accession AL768608 [GenBank]
Graphic View Graphic view of gene At3g28520
Predicted Position of Insertion Chr3:10689042 - go to primer design
BLAST e Value 8e-104
Hit Clone Code (BAC ID) T20D4
Hit Gene Code At3g28520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation P-loop containing nucleoside triphosphate hydrolases superfamily protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 076C01


Last Updated on 10.06.2021 13:37