SimpleSearch - Line and FST details
Line specific information
Line ID | 083E09 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N407929) |
Segregation Analysis | 100:30:24 |
Confirmed for Hit | At5g55020 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit K6A12
Sequence (A. th genome BLAST matches underlined) | >69-011869-strizhov-E9-35St CTGACGTAAGGGATGACGNCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTGATTTAACTTGATATTGGGAAAAGCACGTAATAACAACTA AGTTAGGAGAAAAGTAACAAAAAAAAAAAAAATAACCGGGGCCCCCCACGTTAAACACCC ACTTAAATTCTTTAAAAAAAGGATGCAGGGTTTAAAATGGGGTTGGTTTTAAAAATTGGA ACCCAAAAATCCTTTTTGTTTAAAAAAAAAAAAGGTTTTCTTTCCCGGGTTTGATTTCAA CCCAAAAGGGCCGGGAAAAAAAATTTTGTTTGGGAATCCCCCTATAGGGGGGCGGTATTC ACAGGNNCTTGAAAAAAAAATACAATAGAAAAACATATTATTACCTGAGATTTATTACAT TGGAAAAGATAT |
GenBank Accession | AL769099 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:20454438 - go to primer design |
BLAST e Value | 8e-27 |
Hit Clone Code (BAC ID) | K6A12 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Gene hit At5g55020
Sequence (A. th genome BLAST matches underlined) | >69-011868-strizhov-E9-8409 TTGATCCATGGTAGATTTCCCGGACCATGAAGCCTTTACAATTGACTATTACGTGTACGT GTACAAATGTACTTCACTGAATCGGATACAGGACGATAATAAACACACTACTCTGTTACT TTCTCTTCTTGAATAGGCTAGGGATGATGCTATGATCTTGTACGGAGGAGGAGGAGCTGG GAAAGACGGTGGATCCACCAATCACTTTTCAGACGGAGGAGTGATATTGAAGAAAGGTCC ATGGACGGCGGCGGAAGATGAGATACTTGCTGCGTACGTTAGAGAGAACGGTGAAGGGAA TTGGAACGCCGTTCAGAAAAACACAGGTTTGGCTCGTTGCGGCAAAAGCTGCCGTCTTCG ATGGGCCAATCACCTCCGACCAAATCTGAAAAAAGGCTCTTTCACCGGTGACGAAGAACG TCTCATCATTCAGCTTCATGCTCAGCTTGGTAACAAATGGGCTCGCATGGCTGCTCAGGT ATAACAACAACTTATACATATATACTTGGTGTTACCTGCGTTACACGTTAACTAATCTTC ATGCAATTTATTATAGTTACCGGGAAGAACAGACAACGAGATTTAGAACTATTGGAACAC GAGATTGAAACCAACTTCTTCGCCAAGGACTTCCTTTTTTTTCCTCCAGATATTATCCCT AACCCATAACTCCCTCCACAT |
GenBank Accession | AL769098 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:22326340 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | MBG8 |
Hit Gene Code | At5g55020 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | myb domain protein 120 |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |