SimpleSearch - Line and FST details
Line specific information
| Line ID | 271E01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425969) |
| Segregation Analysis | 60:59:7 |
| Confirmed for Hit | At1g08070 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit K24A2
| Sequence (A. th genome BLAST matches underlined) | >05-K015064-022-271-E01-8409 NNNTTTGATCCATGTAGATTTGCCCGGACCTGAAGCACTTTACAATTGAATATACTTCAA TTACGCTACTGTGGCTTCATGCCATACTTTTAAACATTATCCTTTCATGTTTGATTACCA AGATTTTCCTTTTTTATGGTCAACATAAGAAAAAAACTTACTATTTATGTGTTAGATATA CTTACGTATATTGTAAATATAAAGTAAATAAAATGTAAAAATTCATGAAATTCTATCTTA AACTTTATTAGCATTGGCTATGGGATCCTCCCTTACGAGAGTGCTACCGTAATGCTATAA TTTGGGGGTAAGGGAGCCTCCCTGAGTCGTGGTTCTGAAAATATGGCGTCCAAGATCTAT GGGATCCTCCC |
| GenBank Accession | AL943075 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:10376578 - go to primer design |
| BLAST e Value | 4e-53 |
| Hit Clone Code (BAC ID) | K24A2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit T29M8
| Sequence (A. th genome BLAST matches underlined) | >05-K015071-022-271-E01-8409 TATCCTGTAGATTTCCCGGACATGAAGCCATGTACAGCGCCTTTATTTCATGTAAATTGC TATATGCAGCCCTTACTCTTACTATTCTCATACATTACAAGATCTTGAGTTTAATTTATC AACGAGAAAAAACAAAACGAAAAAAAGCATAATCTTTATATGGTCTTTGGTGGATAGACT TTATAAATGTATTTTAATTAATCATTATTGGACTATTCTTAATCTGTTATTTCTGTCAGG ATCTTGAACTATCAACTACTACTATCTCTATTTATTTATTTTATTTTTTGTCCCTATGGG ATCCTCCCTATAGGGAGATCACTTAAATAGGCCTACCTCAATGCGGAGAACATTTCCTTT ATTGAGTAAAAACAATAATTATATTGTTCTTTCAAGACTTAAACGTTAGAAAGCTCTCGG AAAAACAAACATTTTCCCGTGTATTAAGCTGTACGTATATGATGTTATAATTATCTCAAG AAAGCATACATATTGATTGTAAATAAAAAGAGTAGACTATGGGATCCTCCCTAAAGTGGA GANNNNNTNNNTNNGNTNNTGTCGNTTGGTGGTCCCNAACAAATACGTGAAATGGCCCCG ATCGGGTAAAAAGACGGAGAGGGCACTTCGCAGCGGGGGGATNTACGGGGGAGAATGGCC GCCCGCAGCAACGTGCGAGGATTGGAAGAAAAAGAGAGAAAATC |
| GenBank Accession | AL943076 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:6654318 - go to primer design |
| BLAST e Value | 1e-93 |
| Hit Clone Code (BAC ID) | T29M8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g08070
| Sequence (A. th genome BLAST matches underlined) | >05-K015064-022-271-E01-8409 NNNTTTGATCCATGTAGATTTGCCCGGACCTGAAGCACTTTACAATTGAATATACTTCAA TTACGCTACTGTGGCTTCATGCCATACTTTTAAACATTATCCTTTCATGTTTGATTACCA AGATTTTCCTTTTTTATGGTCAACATAAGAAAAAAACTTACTATTTATGTGTTAGATATA CTTACGTATATTGTAAATATAAAGTAAATAAAATGTAAAAATTCATGAAATTCTATCTTA AACTTTATTAGCATTGGCTATGGGATCCTCCCTTACGAGAGTGCTACCGTAATGCTATAA TTTGGGGGTAAGGGAGCCTCCCTGAGTCGTGGTTCTGAAAATATGGCGTCCAAGATCTAT GGGATCCTCCC |
| GenBank Accession | AL943075 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2514843 - go to primer design |
| BLAST e Value | 1e-06 |
| Hit Clone Code (BAC ID) | T6D22 |
| Hit Gene Code | At1g08070 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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