SimpleSearch - Line and FST details


Line specific information

 
Line ID 294D01
Vector Used pAC161
Line Availability available as T3 set from NASC (N428165)
Segregation Analysis 50:45:29
Confirmed for Hit At2g07717
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At5g48230

 
Sequence (A. th genome BLAST matches underlined) 
>04-K015444-022-294-D01-8409
AACCTTGATCCATGTAGACTTTCCCTGGACATGAAGCCTTTACAATTGAATATATCCTGG
AATTGAAGAATAAGGTAAATGATCCCACATAGATCCCAAATGTTTATAGGGGATCTGGTT
CTTAATGAGATTGGTCCCTTGTTGACTTTTGACACCATTTTGTAGATTAGCAATGGCCCA
TACATCAGAATCTGTGAATCCTATGGGATCCTCCTTNAGGTGAG
GenBank Accession AL946131 [GenBank]
Graphic View Graphic view of gene At5g48230
Predicted Position of Insertion Chr5:19555239 - go to primer design
BLAST e Value 2e-73
Hit Clone Code (BAC ID) MIF21
Hit Gene Code At5g48230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation acetoacetyl-CoA thiolase 2
Insertion Classification TS2TE (5')
Confirmation Status failed

Gene hit At2g07717

 
Sequence (A. th genome BLAST matches underlined) 
>86-K119123-0022-294-D01C-8409
TAGATAGTTGTCTCATCAATAGATAGAAATAGGCTCAAAGACCTTATTATTGATTCCCTC
TCTATTCTCTATCTATTTCTACTCTTTAGATCTATCAGAACAGATCAATTTATCAATCCG
ATTTGAAAATAGCACGTTCATCTCGCTTTTCGTTCATTTTCGCCACGCCAACATGGCCGC
CATAATAAGAAGAAGCAGGCGAAGCAGCTAGAAGCGCTCGCTTCTAGCCCTTTGATTTTG
ATTTACGAATGAATTTGGGAAAGCCAACAGAAAGATTCGATTCAGACTTCGTGGAGCCGG
TGCTGCTGTTGCCTGCGCGTAGAGCCGTCCCCCACTCCCGTCCCGGGGCGCTAAGGGACT
GAAGGGAACAGACGGCAGTGTTTTGCTGACGCCTCGAATCAAGCTTTTGTTGCGACATGC
TATGTTTTCTCCCCCATTGCTAGTAGGTTGATGGGTCGCACGCCCGACACACATGTTTTG
GCCTTGTGTGTCCATAACTCAAAATAGGTGACCTAACGGCCGCCGCCCGACTAAACATAC
CAATAGTCACCAGATTCATATGGGCTACTGAGGAGTAAGCAATGATCTTCTTTAGATCGA
TCTGTCTTGAAGTGGTCAAGGAAGTATATATTATAGCAATGGCGCTTAAAGTATAAATGA
AAGGAGTAGAACAAAGTGTCGCTTCGGGAAACATGGGTATTGAAAATCTTAAAAAACCCG
TGGGTTCCAAATTTTAAAGGAATTCCTGCCAAGATGACGGATCCTGACCGTAGGTG
GenBank Accession LM644497 [GenBank]
Graphic View Graphic view of gene At2g07717
Predicted Position of Insertion Chr2:3421134 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T18C6
Hit Gene Code At2g07717 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37