SimpleSearch - Line and FST details
Line specific information
| Line ID | 333H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N431963) |
| Segregation Analysis | 50:48:36 |
| Confirmed for Hit | At2g34400 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note | |
Gene hit At2g34400
| Sequence (A. th genome BLAST matches underlined) | >56-K016060-022-333-H07-8409 TGATCTGANATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGTCAGTATTAGCG TTCTCGATTTACCGCCAATTTCCTAAATTCAAACCTAGAGGCTACCTGCGATGTACGTTT GAACAAGTATAATCGTCCGCGCTCCAGGAGTCCGGCCTAAATGATTTTAGATTGCTGATA TCGGTATTGGCGCTATACTTCCTCTTGCTGGCATGGGATCCTCCCTATATTGAGATGATC CTGCTGGGAGGACTCCACAATTTTCTTCGTCCGTCACAACTTCGGAGTGTGGATCGGAAT CGTAGAATACAGTGACGTGAAGAATATGACCAACTCTAGAACGGTTAAGCCCAGCATAGG TTGTGATCACAAGCACGGACTCTTTCCTGAAATCTACATCGACCTATGGCATCCTGCCGG ATAGTGAGACACCATGAAAGCTTTGAGCAGCTAT |
| GenBank Accession | FR808109 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:14516260 - go to primer design |
| BLAST e Value | 4e-16 |
| Hit Clone Code (BAC ID) | F13P17 |
| Hit Gene Code | At2g34400 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pentatricopeptide repeat (PPR-like) superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g31660
| Sequence (A. th genome BLAST matches underlined) | >56-K016065-022-333-H07-8409 TGAGCATTTTACATTGATATATCCTGTCAGTATTAGCGTTCTCGATTTACCGCCAATTTC CTAAATTCAAACCTATGGAATCTTCCCTATAGTGAGACGCATCCGNCGCTTCTTCCAGGA AACGATCAAAGGATCCAAAAACCCATCAGAAACAGGATAAGGTGAGTTTCGTCATTTTTT CAAATTTCAAGCTTTTAGAATGTTTCAATTGATCGATAATTTGGGTATTTTTGCAGTTGA TTGAAGCTGGTATGAGCGAGAAGATCATGAAACAAGCTCTTGCCCAACAAAAGGAAGTTG CTGATGAAGAGAACGCCGAGAGAAACCCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL951135 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:11333448 - go to primer design |
| BLAST e Value | 4e-121 |
| Hit Clone Code (BAC ID) | F27M3 |
| Hit Gene Code | At1g31660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | bystin-like protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 332H07 |
Gene hit At2g23170
| Sequence (A. th genome BLAST matches underlined) | >56-K016060-022-333-H07-8409 TGATCTGANATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGTCAGTATTAGCG TTCTCGATTTACCGCCAATTTCCTAAATTCAAACCTAGAGGCTACCTGCGATGTACGTTT GAACAAGTATAATCGTCCGCGCTCCAGGAGTCCGGCCTAAATGATTTTAGATTGCTGATA TCGGTATTGGCGCTATACTTCCTCTTGCTGGCATGGGATCCTCCCTATATTGAGATGATC CTGCTGGGAGGACTCCACAATTTTCTTCGTCCGTCACAACTTCGGAGTGTGGATCGGAAT CGTAGAATACAGTGACGTGAAGAATATGACCAACTCTAGAACGGTTAAGCCCAGCATAGG TTGTGATCACAAGCACGGACTCTTTCCTGAAATCTACATCGACCTATGGCATCCTGCCGG ATAGTGAGACACCATGAAAGCTTTGAGCAGCTAT |
| GenBank Accession | FR808109 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr2:9864407 - go to primer design |
| BLAST e Value | 5e-28 |
| Hit Clone Code (BAC ID) | T20D16 |
| Hit Gene Code | At2g23170 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Auxin-responsive GH3 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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