SimpleSearch - Line and FST details


Line specific information

 
Line ID 399E08
Vector Used pAC161
Line Availability available as T3 set from NASC (N438264)
Segregation Analysis 50:9:5
Confirmed for Hit At1g43020
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g03330

 
Sequence (A. th genome BLAST matches underlined) 
>399E08-LB-5-807260-R-150-a
ATCTAACTTCTTCTTCTTCATTTCAACCATTTATTTTCTCAGATCTAGGTCCATTTTATT
CTCGATTCATAGCCCCCCAAAAAAAAAACTCCTGCTTTGAGTTCATTACTAAATCTCCAA
GTTGGTCTCTTTGTTTTCAAAAAGCTTTTA
GenBank Accession KG784778 [GenBank]
Graphic View Graphic view of gene At5g03330
Predicted Position of Insertion Chr5:807260 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) F12E4
Hit Gene Code At5g03330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cysteine proteinases superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status unknown
Other FSTs Supporting this Hit KG784778 [GenBank]

Gene hit At1g43020

 
Sequence (A. th genome BLAST matches underlined) 
>399E08-LB-1-16156918-R-150-a
TGTTTATCCTCTCCAGGCAGCATTTAACATAGGTGGGGAGTGGGTAAATGCATACGATAT
CCAGAGTTCGATATTGGGCATTCGTCCATGCCATTCACCATCAGTAAGTTGATTTATGAC
TTAACTTGTTTGCATACGTTTGTATGTGTT
GenBank Accession KG784774 [GenBank]
Graphic View Graphic view of gene At1g43020
Predicted Position of Insertion Chr1:16156918 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) F13A11
Hit Gene Code At1g43020 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation electron protein, putative (Protein of unknown function, DUF547)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit F18A8

 
Sequence (A. th genome BLAST matches underlined) 
>399E08-LB-2-11392362-R-150-a
AGTGACGATAAAGTTTGTATCATCAAAAATAAAAATTCGTTTCTTTCAACAAGAAACCGT
TCATAAAGAAGAGTAACAGGTTAGGAGGAGAAGAGAAGAAGATAGAAAATATAATAAACT
AGAAAAGCAGCCACAAGTATTCAATCCTCC
GenBank Accession KG784775 [GenBank]
Graphic View Graphic view of sequence KG784775 of line 399E08
Predicted Position of Insertion Chr2:11392362 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) F18A8
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit T3F17

 
Sequence (A. th genome BLAST matches underlined) 
>399E08-LB-2-18999621-F-150-a
GACCCACGTGTATGGCCACGTTTTTGCCATCATGGAATCACCATAAAAGGAAAAATAAAA
AATACTTTTTTAGTTTATTTTCTTTCATTATTATGAAAACAAAACAATAAAGAAAAGGCC
CACAAGCCCGACAACTGCTTCGAATCCAAC
GenBank Accession KG784776 [GenBank]
Graphic View Graphic view of sequence KG784776 of line 399E08
Predicted Position of Insertion Chr2:18999621 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) T3F17
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g60370

 
Sequence (A. th genome BLAST matches underlined) 
>399E08-LB-3-22316474-R-150-a
GAAGAACTCACAGAGAAATGTAAGTCTTGGAGAGAGAGGAGTTGATAGAATCGTCACCAT
TGCTTCTCCCTCCGGCGATTCCTGCAAAAATCCAATGTTTATCCTAAAGTTTAATTTTGT
AGATAAATTACATTTTACACCATCCATTTT
GenBank Accession KG784777 [GenBank]
Graphic View Graphic view of gene At3g60370
Predicted Position of Insertion Chr3:22316474 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) T8B10
Hit Gene Code At3g60370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit KG784777 [GenBank]


Last Updated on 10.06.2021 13:37