SimpleSearch - Line and FST details
Line specific information
Line ID | 399E08 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N438264) |
Segregation Analysis | 50:9:5 |
Confirmed for Hit | At1g43020 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g03330
Sequence (A. th genome BLAST matches underlined) | >399E08-LB-5-807260-R-150-a ATCTAACTTCTTCTTCTTCATTTCAACCATTTATTTTCTCAGATCTAGGTCCATTTTATT CTCGATTCATAGCCCCCCAAAAAAAAAACTCCTGCTTTGAGTTCATTACTAAATCTCCAA GTTGGTCTCTTTGTTTTCAAAAAGCTTTTA |
GenBank Accession | KG784778 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:807260 - go to primer design |
BLAST e Value | 3e-80 |
Hit Clone Code (BAC ID) | F12E4 |
Hit Gene Code | At5g03330 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Cysteine proteinases superfamily protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | unknown |
Other FSTs Supporting this Hit | KG784778 [GenBank] |
Gene hit At1g43020
Sequence (A. th genome BLAST matches underlined) | >399E08-LB-1-16156918-R-150-a TGTTTATCCTCTCCAGGCAGCATTTAACATAGGTGGGGAGTGGGTAAATGCATACGATAT CCAGAGTTCGATATTGGGCATTCGTCCATGCCATTCACCATCAGTAAGTTGATTTATGAC TTAACTTGTTTGCATACGTTTGTATGTGTT |
GenBank Accession | KG784774 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:16156918 - go to primer design |
BLAST e Value | 3e-80 |
Hit Clone Code (BAC ID) | F13A11 |
Hit Gene Code | At1g43020 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | electron protein, putative (Protein of unknown function, DUF547) |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit F18A8
Sequence (A. th genome BLAST matches underlined) | >399E08-LB-2-11392362-R-150-a AGTGACGATAAAGTTTGTATCATCAAAAATAAAAATTCGTTTCTTTCAACAAGAAACCGT TCATAAAGAAGAGTAACAGGTTAGGAGGAGAAGAGAAGAAGATAGAAAATATAATAAACT AGAAAAGCAGCCACAAGTATTCAATCCTCC |
GenBank Accession | KG784775 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:11392362 - go to primer design |
BLAST e Value | 3e-80 |
Hit Clone Code (BAC ID) | F18A8 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Gene hit T3F17
Sequence (A. th genome BLAST matches underlined) | >399E08-LB-2-18999621-F-150-a GACCCACGTGTATGGCCACGTTTTTGCCATCATGGAATCACCATAAAAGGAAAAATAAAA AATACTTTTTTAGTTTATTTTCTTTCATTATTATGAAAACAAAACAATAAAGAAAAGGCC CACAAGCCCGACAACTGCTTCGAATCCAAC |
GenBank Accession | KG784776 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:18999621 - go to primer design |
BLAST e Value | 3e-80 |
Hit Clone Code (BAC ID) | T3F17 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Gene hit At3g60370
Sequence (A. th genome BLAST matches underlined) | >399E08-LB-3-22316474-R-150-a GAAGAACTCACAGAGAAATGTAAGTCTTGGAGAGAGAGGAGTTGATAGAATCGTCACCAT TGCTTCTCCCTCCGGCGATTCCTGCAAAAATCCAATGTTTATCCTAAAGTTTAATTTTGT AGATAAATTACATTTTACACCATCCATTTT |
GenBank Accession | KG784777 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:22316474 - go to primer design |
BLAST e Value | 3e-80 |
Hit Clone Code (BAC ID) | T8B10 |
Hit Gene Code | At3g60370 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Other FSTs Supporting this Hit | KG784777 [GenBank] |
Last Updated on 10.06.2021 13:37 |