SimpleSearch - Line and FST details


Line specific information

 
Line ID 403H03
Vector Used pAC161
Line Availability available as T3 set from NASC (N438679)
Segregation Analysis 50:48:48
Confirmed for Hit At5g01630
Parent of DUPLO pair 12335
Parent of pair(s) none

Gene hit At5g01630

 
Sequence (A. th genome BLAST matches underlined) 
>24-K017864-022-403-H03-8409
ATTCCCACAAACAATATCAGATGGATACAGCTGAAACTATGCCGAGGGTCAGGACGGCCT
TGGGGAAAACTGTCCCTTTGAAAGAGTCTTCAATTGCCAAACCTTTGTCTATTCTATGGG
ATCCTCCCTATAGTGAGAGGATGGGATCCTCCCTATAGCGAGAGANGNGCNGNCCANNCN
AGCGGGGGGCCCGGCGTACAATCAGAGAGAGACTGAATAATCCGGAGCAGGAACATGCCG
GAGGAAACCATCAACGAGTGGAACGAAATATACAT
GenBank Accession BX287687 [GenBank]
Graphic View Graphic view of gene At5g01630
Predicted Position of Insertion Chr5:240470 - go to primer design
BLAST e Value 2e-39
Hit Clone Code (BAC ID) F7A7
Hit Gene Code At5g01630 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation BRCA2-like B
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g56130

 
Sequence (A. th genome BLAST matches underlined) 
>24-K017818-022-403-H03-8409
AGCTCGCGCTGTTGTATCCACACTCAATCACAACGGTCAAATTAATATAACCGGTCAATG
TATTAACAGAAACTAACCGGTAAGTATCTTATTATTTTGGAATTTGTGGATACGATTCAT
GGTGTATTTTTTGTTTCTAATCAATTTGGATCCGAATAACTATGGGATCCTCCCTATAGT
GAGAGGAAGCGTCCCTATATCTAGTGGGATGCGATAGAATATTAACTCCAGAGGATCTGT
CCAATTATGCACCTTGGTTGATTAAGAATCAAAGAAGAAATGGACAATCGGACCCTCCAC
TTCGCGCAGGAAACCATCGCCGCTGGAATCGGAAAATAAATGCCACGTCGACATTTATTC
AGTCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX287686 [GenBank]
Graphic View Graphic view of gene At1g56130
Predicted Position of Insertion Chr1:21000501 - go to primer design
BLAST e Value 6e-77
Hit Clone Code (BAC ID) T6H22
Hit Gene Code At1g56130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat transmembrane protein kinase
Insertion Classification TS2TE (5')
Confirmation Status unknown


Last Updated on 10.06.2021 13:37