SimpleSearch - Line and FST details
Line specific information
Line ID | 413F11 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N439623) |
Segregation Analysis | 50:44:42 |
Confirmed for Hit | T5I8 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Note |
Gene hit MDC16
Sequence (A. th genome BLAST matches underlined) | >86-K025921-022-413-F11-8409 AGTGATTACGAACATCTATATTGGAAGCAGGAATAAGATTCCATAAAGCTGTTCGCTGAG TTTTATATGAATCCCTTTGATTAAAGAATGATCTGCCCATTGGAGTATGGGATCCTCCCT ATAGTGAGACCTACTCNCGGTTTAGCCAACTAAAGCATGCCTTATGGCCGGAGCCGCGGG GGCAGGCTTAACCCCCATATCAAGTTGCAATGCCTACGGGATCCTCCCTACAGTGAGCTC CAATGTTTCCAAACACCACGATCGCTAACCCCTTCTTTACTCTCTCCCCCGACTTGATCA AACCAAACCCCCACCCTTCTCTTCCCCCACTTTCAAACTTCATAACGGCATCACCTACCC AACCATCAATCATCATCTTTCCATACCCCCCCCTGTAGACGGCCGCGATCTCCCATTATC ACTCCCTCTCATCCCCTCTCCCTCCACTCTTTACACTTCCCCCTACACTTACAACCCCAT TTCCTATTTCCTTCCC |
GenBank Accession | FR809841 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr3:4654802 - go to primer design |
BLAST e Value | 4e-06 |
Hit Clone Code (BAC ID) | MDC16 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Gene hit At2g34150
Sequence (A. th genome BLAST matches underlined) | >86-K018003-022-413-F11-8409 TGATCATGAAATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTATTTGAATAT ATATCCTCATGTAGCCTTATAATCTTCTCTTAAGTGCTCTTGGAAGGTTTCAGAATCAAT GTCTTCAACAATCTCTGGAATAGTTTCTGCTATAATTTTCGGTTTCGATGGTTTCAGTCC TATGGGATCCTCCCTATAGTGAGANNAANNNATNNNANAATTGACCATCCTTTTCCTTTC CGCAAAAGAAAAAGTCCCCCGCCCTGTTATCAAATGACAATGCCTTTTTATAAAACCAAC AAATTCTACCCCTTTTTTCTTTTGGTCAACGCCAAAAACATTTTATCCCAATTCGGAAAT CTTTATTTCCACACTCCCCCATTTACGGCCTGCTGGGGGATTTTACGACAAACGCCTCAA TTCCCCTCCCAAACTCCCAAGAAAAAGAGGAANANAGGGCCCCACATGACCGAACCAACA CACTCCCCACACACCCCCAGCGAAACCACCCCAACAAAAGAAGAACCGCCAGAAACACAA ACAGACCCCGAGAGACCCCAATACCCGGAAGAGAGCCGCACCCCCCGAGAGGGTAATATC CGATAACCGAACC |
GenBank Accession | BX288409 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr2:14420857 - go to primer design |
BLAST e Value | 2e-55 |
Hit Clone Code (BAC ID) | T14G11 |
Hit Gene Code | At2g34150 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | SCAR family protein |
Insertion Classification | CDSi |
Confirmation Status | failed |
Gene hit T5I8
Sequence (A. th genome BLAST matches underlined) | >86-K025920-022-413-F11-8409 TTTATTATGACTAATTCGGAATGAAGCCATTTACATTGAATATATCGCTGCTTCGAATGA AATTGTGCACACATGATTTAGCTAGTATTTAGTTTATCCAGTATATCTTAAGACGATTTG TATCGATGTGCTAGTCTATCATTACATTATTGGCCCATTCCCCATTTAATATGTGACCGA AGACACCAAACTACCGCTCCTTTAGCCAAATATAGCATGCATTATTGCAATAGCCTCGAA CGCAGGCTTAAGCCCAATAACAAGTTGGAATGTGTATGGGATCCTCCCTATAGTGAGCTC AAAGTATTTGAACGCAAGTATGGGATCCTCCCTATAATGAGAAAAGTAGATGTCTGCATC GTTATTATCATTTTTATGAACCGCTAATGTANATGACTGCATCGTATTTTTCTTATTTTT AT |
GenBank Accession | CR397068 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr1:10846239 - go to primer design |
BLAST e Value | 1e-30 |
Hit Clone Code (BAC ID) | T5I8 |
Insertion Classification | Genome Hit |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |