SimpleSearch - Line and FST details


Line specific information

 
Line ID 413F11
Vector Used pAC161
Line Availability available as T3 set from NASC (N439623)
Segregation Analysis 50:44:42
Confirmed for Hit T5I8
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit MDC16

 
Sequence (A. th genome BLAST matches underlined)
>86-K025921-022-413-F11-8409
AGTGATTACGAACATCTATATTGGAAGCAGGAATAAGATTCCATAAAGCTGTTCGCTGAG
TTTTATATGAATCCCTTTGATTAAAGAATGATCTGCCCATTGGAGTATGGGATCCTCCCT
ATAGTGAGACCTACTCNCGGTTTAGCCAACTAAAGCATGCCTTATGGCCGGAGCCGCGGG
GGCAGGCTTAACCCCCATATCAAGTTGCAATGCCTACGGGATCCTCCCTACAGTGAGCTC
CAATGTTTCCAAACACCACGATCGCTAACCCCTTCTTTACTCTCTCCCCCGACTTGATCA
AACCAAACCCCCACCCTTCTCTTCCCCCACTTTCAAACTTCATAACGGCATCACCTACCC
AACCATCAATCATCATCTTTCCATACCCCCCCCTGTAGACGGCCGCGATCTCCCATTATC
ACTCCCTCTCATCCCCTCTCCCTCCACTCTTTACACTTCCCCCTACACTTACAACCCCAT
TTCCTATTTCCTTCCC
GenBank Accession FR809841 [GenBank]
Graphic View Graphic view of sequence FR809841 of line 413F11
Predicted Position of Insertion Chr3:4654802 - go to primer design
BLAST e Value 4e-06
Hit Clone Code (BAC ID) MDC16
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g34150

 
Sequence (A. th genome BLAST matches underlined)
>86-K018003-022-413-F11-8409
TGATCATGAAATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTATTTGAATAT
ATATCCTCATGTAGCCTTATAATCTTCTCTTAAGTGCTCTTGGAAGGTTTCAGAATCAAT
GTCTTCAACAATCTCTGGAATAGTTTCTGCTATAATTTTCGGTTTCGATGGTTTCAGTCC
TATGGGATCCTCCCTATAGTGAGANNAANNNATNNNANAATTGACCATCCTTTTCCTTTC
CGCAAAAGAAAAAGTCCCCCGCCCTGTTATCAAATGACAATGCCTTTTTATAAAACCAAC
AAATTCTACCCCTTTTTTCTTTTGGTCAACGCCAAAAACATTTTATCCCAATTCGGAAAT
CTTTATTTCCACACTCCCCCATTTACGGCCTGCTGGGGGATTTTACGACAAACGCCTCAA
TTCCCCTCCCAAACTCCCAAGAAAAAGAGGAANANAGGGCCCCACATGACCGAACCAACA
CACTCCCCACACACCCCCAGCGAAACCACCCCAACAAAAGAAGAACCGCCAGAAACACAA
ACAGACCCCGAGAGACCCCAATACCCGGAAGAGAGCCGCACCCCCCGAGAGGGTAATATC
CGATAACCGAACC
GenBank Accession BX288409 [GenBank]
Graphic View Graphic view of gene At2g34150
Predicted Position of Insertion Chr2:14420857 - go to primer design
BLAST e Value 2e-55
Hit Clone Code (BAC ID) T14G11
Hit Gene Code At2g34150 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SCAR family protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit T5I8

 
Sequence (A. th genome BLAST matches underlined)
>86-K025920-022-413-F11-8409
TTTATTATGACTAATTCGGAATGAAGCCATTTACATTGAATATATCGCTGCTTCGAATGA
AATTGTGCACACATGATTTAGCTAGTATTTAGTTTATCCAGTATATCTTAAGACGATTTG
TATCGATGTGCTAGTCTATCATTACATTATTGGCCCATTCCCCATTTAATATGTGACCGA
AGACACCAAACTACCGCTCCTTTAGCCAAATATAGCATGCATTATTGCAATAGCCTCGAA
CGCAGGCTTAAGCCCAATAACAAGTTGGAATGTGTATGGGATCCTCCCTATAGTGAGCTC
AAAGTATTTGAACGCAAGTATGGGATCCTCCCTATAATGAGAAAAGTAGATGTCTGCATC
GTTATTATCATTTTTATGAACCGCTAATGTANATGACTGCATCGTATTTTTCTTATTTTT
AT
GenBank Accession CR397068 [GenBank]
Graphic View Graphic view of sequence CR397068 of line 413F11
Predicted Position of Insertion Chr1:10846239 - go to primer design
BLAST e Value 1e-30
Hit Clone Code (BAC ID) T5I8
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37