SimpleSearch - Line and FST details


Line specific information

 
Line ID 414G04
Vector Used pAC161
Line Availability available as T3 set from NASC (N439724)
Segregation Analysis 50:48:32
Confirmed for Hit At1g01010
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At1g01010

 
Sequence (A. th genome BLAST matches underlined) 
>31-K026070-022-414-G04-8409
CGATCCCTGGAACTTGCGCTGTAAGTTCCGAATTTTCTGAATTTCATTTGCAAGTAATCG
ATTTAGGTTTTTGATTCTAGGGTTTTTTTTCGCTTTGAACAGGCCAGTCAAAGTATGGGA
TCCTCCCTATAGTGAGAC
GenBank Accession CR397176 [GenBank]
Graphic View Graphic view of gene At1g01010
Predicted Position of Insertion Chr1:3696 - go to primer design
BLAST e Value 3e-34
Hit Clone Code (BAC ID) T25K16
Hit Gene Code At1g01010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAC domain containing protein 1
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g23900

 
Sequence (A. th genome BLAST matches underlined) 
>31-K026073-022-414-G04-8409
AAAATCTACATATTAATCACTGACCCTGTTTGCACATCCCCCTGTGCTTTCCACACCCAT
CGTATCATAAAGAATGAGCTCCCTAATCTGCAGATCTGCTTCTATGGCATCCTCCCTATG
GTGAGGGGGGTCCTCTGGCCTGTATAAAAAAAANCTTAATCTACATGCTAGGGCCTCCTC
TCTATCGAGGAAAAGGAGGCAGGAAAGAAAACCTCCCCATGAGTGGGGCTGAGCAAGACG
GAACCACCGACACAAGTGTAGCGGAACCAAGACAATGTGGACTCCACTGCGTCATAAGCA
CCACGGCCCCGACCTAACGGTGCGCTGATGGGGGGCGGGACATACCCCTCTTCGAGACCA
CCCAGACCTCACCGTTCCCCCCCCACCCGACGAGGACATTCTCTCTAATTACTAT
GenBank Accession CR397177 [GenBank]
Graphic View Graphic view of gene At4g23900
Predicted Position of Insertion Chr4:12424377 - go to primer design
BLAST e Value 1e-08
Hit Clone Code (BAC ID) T32A16
Hit Gene Code At4g23900 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Nucleoside diphosphate kinase family protein
Insertion Classification Promoter
Confirmation Status failed, line belongs to a contamination group, please check line 137C04


Last Updated on 10.06.2021 13:37