SimpleSearch - Line and FST details


Line specific information

 
Line ID 414H06
Vector Used pAC161
Line Availability available as T3 set from NASC (N439738)
Segregation Analysis 50:38:22
Confirmed for Hit At5g01445
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At3g20640

 
Sequence (A. th genome BLAST matches underlined) 
>48-K026073-022-414-H06-8409
NNNTTTTGCGTTAATCCGGACATGAAGCCATTTACATTGAATATCTCCCGTACGTGAGTA
TGGGATCCTCCCTACCTCTGACGACGAGAGAACTATCCCTAAGCCACCCTCAGAGAGAGT
AGCCCAAGCCCTCCATTTCTGTTGTAAACATTGCGTATAATGCAGTTTCCCCCGACGTTA
TATGATCGAGAACGATATTAAGAAAGATCTCTTATATTGCTACAGTTGTTTTATTTTATC
TTACGAAAACAAAAATTCTTCCCACAATTCCTGGATAATTGCTTATACTAAATCTCTTTA
CTTTTTTTACTTCATACTATTTTTTTTATAACAAGGATTTGTTTTGATAAAATTTTGCTG
AATTAGAGCAAAGACACCCTGGGGGACTCAATCTCTGCGCTCCAACACTTGGTTTCACCT
TTCAGAAAGGTATGGGATCCCCCCTATATTCAGATCTTGGTCTCACTCTATTATTGCTAA
AACATTTCTCAGAGAGCATTCTCCAGCTTGATCTACCTACTTGTGCTATTCAACTTAAAA
ACATGAATAGAAAATCATGCACAATTTG
GenBank Accession CR397187 [GenBank]
Graphic View Graphic view of gene At3g20640
Predicted Position of Insertion Chr3:7211901 - go to primer design
BLAST e Value 4e-55
Hit Clone Code (BAC ID) F3H11
Hit Gene Code At3g20640 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g01445

 
Sequence (A. th genome BLAST matches underlined) 
>48-K026070-022-414-H06-8409
AGCTTACGAGAGTTTAAAGATAATCCAGATGTTCGAGATACTTCTCTGAACCGATGTCCG
TCGCCGAGATTAGTTACCACTGGAAAATTTTTATCGATTGTTTTAAGGGAACGACACTAT
CCCGAGACAAATCATTGACTCCCCTTGTTCTTCAAGAGATGTAACTTAAACCTGGTATGC
TTANTTCAAATATGAATTAGCACCCCTTTTATTTCCTATCTTTGGCTCACTCTATTATTG
CTAAAACATTTCTCAAAGAGCATTCTCCAACTTGATCTATCTACTTGTGCTATTCACCTT
AGAAACATGAATAAAATAGCATGCAT
GenBank Accession CR397186 [GenBank]
Graphic View Graphic view of gene At5g01445
Predicted Position of Insertion Chr5:182273 - go to primer design
BLAST e Value 1e-70
Hit Clone Code (BAC ID) T10O8
Hit Gene Code At5g01445 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37