SimpleSearch - Line and FST details


Line specific information

 
Line ID 535C06
Vector Used pAC161
Line Availability donated as individual T3 stock by SALK (N923031), homozygous for At5g01445 (Chr5:182882), TDNA-Seq FST GenBank-ID: KG787546
Segregation Analysis unknown
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit F1K3

 
Sequence (A. th genome BLAST matches underlined) 
>535C06-LB-4-4795035-R-150-a
GATGAATTAAAAAATGATAATCTGGAAAATGGCTCCAAATTCTTTACTCTCTAAACTATT
TATAAACATACTTACATACATCATTTTAATATGAAAGAAATTGCTCTAATTCTTGATCTA
ACCAAAGTTTTTTGGAATCTAATAGCAATA
GenBank Accession KG787545 [GenBank]
Graphic View Graphic view of sequence KG787545 of line 535C06
Predicted Position of Insertion Chr4:4795035 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) F1K3
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit KG787545 [GenBank]

Gene hit T10O8

 
Sequence (A. th genome BLAST matches underlined) 
>535C06-LB-5-182882-R-150-a
AGGCTCTAGCTATGTTAGAACGGGACAAAGATATGTTGCAAATCAATAACATAAAAATGT
TTTAAGTCATAGTAAAGCATAGCATGACATATCTTGTAGAACAAGGGGAGAAAGAGAAAG
CGTCGGACAGATCTCTCTTGAGAAATCTCA
GenBank Accession KG787546 [GenBank]
Graphic View Graphic view of sequence KG787546 of line 535C06
Predicted Position of Insertion Chr5:182882 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) T10O8
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g10010

 
Sequence (A. th genome BLAST matches underlined) 
>43-K020488-022-535-C06-8409
TCTTCCCAATACAGAGCATTTGTACATTCTTATTCCTGTTATCAAGGAGACAAATGCCTA
TGGGATCCTCCCTATAGTGAGCATACATACNAACTAATGATGTAATTTTCCCCAAAATGA
ATTTAACTTAAACAAATGATCAAAAGCAACATTCTCGTCAAAGCTCTATTTGGACTATAC
TTGTGCAGGTTCTTCCTAACCATAACCCAATGCAATCCTCCCTATATTCTAGTTCCGAAA
TCTTTATTTCCACGTGTCTACATTCCCGTCCAAATGGGAAACTACCAATTCCTCTTAATC
CACTAAAATGAGAACCCCCTCCAATCTCCAAACCAATTACCACCC
GenBank Accession BX546863 [GenBank]
Graphic View Graphic view of gene At3g10010
Predicted Position of Insertion Chr3:3082749 - go to primer design
BLAST e Value 1e-42
Hit Clone Code (BAC ID) T22K18
Hit Gene Code At3g10010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation demeter-like 2
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37