SimpleSearch - Line and FST details


Line specific information

 
Line ID 672F01
Vector Used pAC161
Line Availability available as T3 set from NASC (N464477)
Segregation Analysis 50:47:41
Confirmed for Hit At2g30840
Parent of DUPLO pair none
Parent of pair(s) 7549, 7556, 7573, 11341, 11345, 95810, 95817, 95832, 95847, 95864, 95867, 95869, 95873, 95874, 95875

Gene hit At2g30840

 
Sequence (A. th genome BLAST matches underlined) 
>06-K023063-022-672-F01-8409
TCAGCCCTAAAGCTTCTGATAAAGCTCAGAGATTAGTTCCCCTAGTTTCATCACTGCGTT
TCGCATATTCCAACATGATTTCCCTAAAACATTCACACAACTAGATAAGTCTTCTTTCTT
TCTTTCTTTCTTCTATAGACTAAGAAATAAAGGAAATTTGTATTTCGTATGGGATCCTCC
CTATAGTGAG
GenBank Accession BX661263 [GenBank]
Graphic View Graphic view of gene At2g30840
Predicted Position of Insertion Chr2:13136149 - go to primer design
BLAST e Value 1e-43
Hit Clone Code (BAC ID) F7F1
Hit Gene Code At2g30840 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit MQD22

 
Sequence (A. th genome BLAST matches underlined) 
>06-K022919-022-672-F01-8409
AGCCATTTACATTGAATATATCCTGCCTTGAACGACGATCTGATCCCCGGGTATGGAATC
CTCCCTATAGTGAGATCGCAGATCAGCTTTCTATCATGATGATCACAATCCCTGCCAAAA
GTCTATAGACATAGATCATTGCGTATGATAGTATCTCTGTATGTACTTATCTTACTGGAT
GAGACTTGTCTAGCCTTGTAATTTGCTTGTGCGTGGCAGCCTCCCTTACGTGAGATGTGT
TTTACACAGAAAAAGAAGAGATACCATTGTGGCGCACCACGCGCCATTATTGATCTACAC
TCTCCATATTGAGGTATATGTAT
GenBank Accession BX661262 [GenBank]
Graphic View Graphic view of sequence BX661262 of line 672F01
Predicted Position of Insertion Chr5:19111094 - go to primer design
BLAST e Value 1e-33
Hit Clone Code (BAC ID) MQD22
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37