SimpleSearch - Line and FST details


Line specific information

 
Line ID 677H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N464985)
Segregation Analysis 50:50:50
Confirmed for Hit At1g02830
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g02830

 
Sequence (A. th genome BLAST matches underlined) 
>40-K023105-022-677-H05-8409
GCCATTTACATGTAGATTAGACGTTGGCTCGAAAAGATGAAAATCTTCCCGCGGCGAGGT
TAGGGATGGACTATATAAATGACCCACAAGAGTCCCTATGGGATCCTCCCTATAGTGAGT
GCCATAACTCCCTTTGATGTAACTGGAATANACACCTTATTTGTACTTCTATGGGANCCC
CCCGNNNGCCTGCCGGGGGGGGGGGGGGGNCACTCCCNAATTCCCAAACTATCACACCAT
CGCACAGATCTTACGAGCCTTCCCTCACACACCGCCACACTAACAGGAACCCGCGCGCCC
CCTGAGCAGCTCCACCTCCGCGCCCCGCTTTCAACCACTCCCTCCTTCCCACTACGCGCC
TTCCCGTCTCGCCCAGCCACTCGATATCCTCTCCGAAACTTGGGGCGAAAACAACTCGAC
GACTGTCGGGGGGGCATGACATCTACCCAGCACCCTTATGCTGCACCCACCGTGGAGCGC
TACTGTCCTCTAGGCACGCCAGTGGGTTCGAGCGCGCGTCGACGCGTCCCGCCAGGACCC
CCAACCTAACAGCGCGCGCTACCGGCGCGACGCAGCGACACCGACACAGTCAC
GenBank Accession BX661695 [GenBank]
Graphic View Graphic view of gene At1g02830
Predicted Position of Insertion Chr1:625647 - go to primer design
BLAST e Value 3e-41
Hit Clone Code (BAC ID) F22D16
Hit Gene Code At1g02830 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal L22e protein family
Insertion Classification 5' region
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g16300

 
Sequence (A. th genome BLAST matches underlined) 
>40-K023107-022-677-H05-8409
GCCATTTACTGACCTTTACCTGCATGAAAGACTTGAAGCCACGCCGCAAATTGGAATTTT
CTTCTAAATCACTTGTTTGAGATTGCTCGCCGTTTGTAAATGCCTTCCATGAGTTTCTTG
CCGAAGCATCATTTGATGTAACTGGAATAGAGACCTTATTTGTACTTCTATGGGATCCTC
CCTATAGTGAGNNGN
GenBank Accession BX661696 [GenBank]
Graphic View Graphic view of gene At5g16300
Predicted Position of Insertion Chr5:5341955 - go to primer design
BLAST e Value 1e-73
Hit Clone Code (BAC ID) MQK4
Hit Gene Code At5g16300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Vps51/Vps67 family (components of vesicular transport) protein
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit BX661694 [GenBank]


Last Updated on 10.06.2021 13:37